MmuEX0038181 @ mm9
Exon Skipping
Gene
ENSMUSG00000036327 | Qsox2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:MGI Symbol;Acc:MGI:2387194]
Coordinates
chr2:26076150-26077886:-
Coord C1 exon
chr2:26077741-26077886
Coord A exon
chr2:26076429-26076563
Coord C2 exon
chr2:26076150-26076279
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGCCCTTCTTCCTTTCACAGTGC
3' ss Score
11.43
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GTGATCTTAGATTTGATTCCATATGAAAACATCATGGTGAGCCGAGCACTGGATACGGACAAAGCATTTCTGGGGACACTTGGCATTACTTCAGTGCCTTCCTGTTACTTGATTTACCCAAATGGGTCTCATGGACTGGTTAATGT
Seq A exon
TGCAAAGCCTCTACGATCGTTTTTCTCCTCTCATTTAAAATCCTTACCAGATGTAAGGAAAAAGTCACTTTTCTTGCCTGAAAAGTCCAACAAAGAAGAAAAATCAGAGGTGGTGGTTTGGAAAGAATTTGACAG
Seq C2 exon
GGCCAAGCTGTATACTGCAGACCTGGAGTCGGGACTTCACTACCTGCTGAGAGTGGAGCTGGCTGCTCACAGGTCCCTGGCTGGAGCCCAGTTAAAGACATTCAGGGACTTCGTGACTGTCGTTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036327_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACATCATGGTGAGCCGAGC
R:
CAACGACAGTCACGAAGTCCC
Band lengths:
245-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: