RnoEX0071963 @ rn6
Exon Skipping
Gene
ENSRNOG00000018574 | Qsox2
Description
quiescin sulfhydryl oxidase 2 [Source:RGD Symbol;Acc:1584720]
Coordinates
chr3:3674683-3676245:-
Coord C1 exon
chr3:3676100-3676245
Coord A exon
chr3:3674965-3675099
Coord C2 exon
chr3:3674683-3674812
Length
135 bp
Sequences
Splice sites
3' ss Seq
CTCCCTTCTTCCTTTCACAGTGC
3' ss Score
11.44
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GTGATCTTAGATTTGATTCCATATGACAACATCATGGTGAGCCGAGCACTGGATACGGACAAAGCATTTCTGGGGACCCTTGGCATTTCGTCAGTTCCTTCCTGTTACTTGATTTACCCAAATGGGTCTCATGGTCTGGTTAATGT
Seq A exon
TGCAAAGCCTCTACGGTCGTTTTTCTCCTCTTATTTAAAATCCTTACCAGATGTGAGGAAAAAGTCACTTTCCTTGCCTGAAAAGCCCAACAAAGAAGAAAATTCAGAGGTTGTGATTTGGAAAGAATTTGACAG
Seq C2 exon
GGCCAAGCTATACACCGCAGACCTGGAGTCGGGACTTCATTACCTGCTGAGAGTGGAGCTGGCTGCCCACAGATCCCTGGCCGGAGCCCAGTTAAAAACATTCAAGGACTTCGTGACTGTCATTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018574-'9-7,'9-6,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.109 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAACATCATGGTGAGCCG
R:
TGGCAATGACAGTCACGAAGTC
Band lengths:
251-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]