DreEX6014201 @ danRer10
Exon Skipping
Gene
ENSDARG00000077174 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr5:63617776-63620553:+
Coord C1 exon
chr5:63617776-63617921
Coord A exon
chr5:63618016-63618159
Coord C2 exon
chr5:63620424-63620553
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTTGTTGTTCACAGGCA
3' ss Score
10.66
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTAATTTTGGACCTGATGCCATATGAGGGTTTGGTGGTGAAGAGAGCTCTGAGCTCAGACCAACTTCTAATGGACAAGCTGGGGATTAGTTCAGTTCCCTCGGCGTACCTTTTCCAGCCCAACGGCACACACACTGTTTTGAATGT
Seq A exon
GCAGAAGAAGTTACGTTTTTTCTTCTCCTCCTTCCTAAAACTTCTCCCTGGAGTACACAGAAAACAGTCCACCTCGTCCCTGCAGCGTCCTCAGCCTGGGATTAATGGACAGGGAGCCCAGGTGGAGTGGAAAGAGTTTAAAAA
Seq C2 exon
GTCTAAGGTATACATGGCAGATCTGGAGTCTGGCTTACATTATCTCCTGAGGGTTGAGCTGGCCACCCACAAGACCTTAGAAGGAGAAGAGCTAAAAACCTTCAAGGACTTTGTAACCGTTGTTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077174-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.184 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTTGGTGGTGAAGAGAGC
R:
GGCAACAACGGTTACAAAGTCC
Band lengths:
247-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]