GgaEX1047585 @ galGal3
Exon Skipping
Gene
ENSGALG00000001758 | QSOX2
Description
NA
Coordinates
chr17:8717886-8720629:+
Coord C1 exon
chr17:8717886-8718031
Coord A exon
chr17:8718383-8718526
Coord C2 exon
chr17:8720500-8720629
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCCCTTTATACACAGTCT
3' ss Score
6.97
5' ss Seq
TAAGTAAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
GTTATCTTAGATTTGATCCCATATGAAAACATTGTTGTGAAGAGAGCACTGAATTTTGATAAGCCTTTCCTAGAGAAACTTGGGATTACCTCAGTCCCTTCGTGCTACCTGATGCATCCTAATGGATCACATGGGTTAGTTAACAG
Seq A exon
TCTGAAGCCCCTACGGTCGGTCTTTTCTTCATATTTGAAGTCTCTGCCAGGTGTAAGAAAGAAACTTCTTTCACCACTTGAGCTGCCTGTTAAAGAAAACAAAGAGGAGAGCACAGAGATCAAGCTGTGGAAGGAGTTTGATAA
Seq C2 exon
ATCGAAGCTGTACATGGCTGACCTTGAATCTGGATTGCATTACCTGTTCCGGGTAGAGCTTGCTACACACAAGATGCTTGAGGGAGCTGAGCTAAAGACCTTCAAGGATTTTGTTACCATCTCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001758-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF088066=Sep15_SelM=PU(23.6=29.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATCCCATATGAAAACATTGTTGT
R:
TCCTTGAAGGTCTTTAGCTCAGC
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]