HsaEX6063979 @ hg38
Exon Skipping
Gene
ENSG00000165661 | QSOX2
Description
quiescin sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr9:136218679-136221941:-
Coord C1 exon
chr9:136221796-136221941
Coord A exon
chr9:136219030-136219164
Coord C2 exon
chr9:136218679-136218808
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGCCCTCCCCTCTCTCACAGCGT
3' ss Score
11.69
5' ss Seq
CAAGCAAGT
5' ss Score
2.32
Exon sequences
Seq C1 exon
GTGATCTTAGACCTGATCCCGTATGAAAGCATCGTGGTGACCCGAGCACTGGACGGGGACAAAGCATTTCTGGAGAAACTTGGTGTTTCTTCAGTCCCTTCGTGTTACCTGATCTACCCAAATGGGTCGCATGGATTGATTAACGT
Seq A exon
CGTGAAGCCTCTGCGGGCCTTCTTTTCGTCTTATTTGAAGTCATTGCCGGATGTGAGGAAAAAATCGCTTCCCTTGCCTGAAAAGCCACACAAAGAAGAAAATTCAGAAATCGTGGTTTGGAGAGAATTTGACAA
Seq C2 exon
GTCGAAGCTGTACACGGTGGACCTGGAGTCAGGGCTACACTACCTCCTGCGGGTGGAGCTGGCAGCCCACAAGTCCCTGGCCGGAGCAGAGCTGAAGACGCTCAAGGACTTTGTGACTGTCTTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165661-'13-13,'13-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.122 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAAGCATCGTGGTGACCC
R:
TGGCCAAGACAGTCACAAAGT
Band lengths:
252-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains