BtaEX6047126 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011129 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr11:103755894-103757725:-
Coord C1 exon
chr11:103757580-103757725
Coord A exon
chr11:103756262-103756396
Coord C2 exon
chr11:103755894-103756023
Length
135 bp
Sequences
Splice sites
3' ss Seq
GCCTGCCCCCCCTCTTGCAGTGG
3' ss Score
9.75
5' ss Seq
CAGGCGAGT
5' ss Score
2.92
Exon sequences
Seq C1 exon
GTGATCTTGGACCTGATTCCATACGAGAGCATCGAGGTGAGGCGGGCGCTGGGTTCCGACACAGCCTTCCTGCAGAAGCTCGGCGTGCCCTCCCTTCCCTCCTGCTACCTGATCTACCCGAACGGGTCGCACGGACCAGTCACCGT
Seq A exon
TGGGAAGCCCCTCCGGTCGTTTTTCTCCTCTTACCTGAGGTCACTGCCGGGAGTGAGGAAGAAACCAGGTTCCCTTCCTGGGAGACCCAGCAGAGACGAGAGCTCGGAAGCCGTGGTCTGGAGGGACTTTGACAG
Seq C2 exon
GTCAAAGCTGTACACGGCCGACCTGGAGTCAGGGCTGCACCACCTCCTGAGAGTGGAGCTTGCAGCACACAGGTCCCTGGCCGGCGCCGAGCTAAAGACGCTCAAGGACTTCATCACTGTCCTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011129-'12-10,'12-9,14-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.174 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTGATTCCATACGAGAGC
R:
CAGTGATGAAGTCCTTGAGCGT
Band lengths:
257-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]