Special

MmuALTD0005696-2/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000026843 | Fubp3
Description
far upstream element (FUSE) binding protein 3 [Source:MGI Symbol;Acc:MGI:2443699]
Coordinates
chr2:31471018-31473046:+
Coord C1 exon
chr2:31471018-31471145
Coord A exon
chr2:31471146-31471206
Coord C2 exon
chr2:31471699-31473046
Length
61 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
CCCTCTCCCTCCCCCCACAGGAG
3' ss Score
13.73
Exon sequences
Seq C1 exon
GTCATCCCACCAGTGCTGCCCCACAGGCCAGCTCCCCCCCAGACTACACGATGGCCTGGGCTGAGTACTACAGGCAGCAGGCCGCCTTCTATGGGCAGACTTTAGGGCAGGCTCAGGCCCACAGCCAG
Seq A exon
GTCTGTAGCCAGTCCCCAGCGCCATGATGCCACGCAGCCTTTGTGCTTGCCTAGCCCCAGG
Seq C2 exon
GAGCAGTAGATGGGCATCTGCCGCGGCTCTTCCCCGAAATCAGTGTGAGAGAAACCTGTTTGTTACAGAGATTTTTAGATTTGCAAACCTTTTGATGAAGACCTTTGTTTTGTTCTGTGAAACACTATATTTAGATTAACAGAAATTTTCTAAAAATTGGGAAAATTAGTTACTAAACATTGCTGGTAATTTTTACGTCATGATTTCTTTGTAAATGTGTGAGCTCCGGGGCTCTTGGAGCGAAACCTGCAAGCTCGGGTGCCCAAGCTCTCCTCGGAGCCTGGCATTTCATCACACGATGGCTTTGTCTTGTGTCTTTTTAGTTACAGTTTGGGGTGGGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGGTTTTTGGTTTTGGTTTTTGTTTTCCCTTTTTTTTTTTTTTTTTTCTGTTACAACAGAAAAAATGGCTTGGAAGTCTTAGGTGGTAATGTAACAAATTCTTTAAAAATTTTTGAAGCAGTATTTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026843-26-32,27-32-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref, Alt. Stop)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.674 A=NA C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF090055=DUF1897=PD(23.3=16.3),PF090055=DUF1897=WD(100=76.7)

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000109110





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000117970, ENSMUSP00000123589
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr9:133511597-133511598 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr11:100950624-100950624 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr17:6541983-6541984 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGACTACACGATGGCCTGGG

				
R: 
CACTGATTTCGGGGAAGAGCC

				
Band lengths: 
133-194

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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