MmuINT0009047 @ mm9
Intron Retention
Gene
ENSMUSG00000026842 | Abl1
Description
c-abl oncogene 1, non-receptor tyrosine kinase [Source:MGI Symbol;Acc:MGI:87859]
Coordinates
chr2:31653083-31659747:+
Coord C1 exon
chr2:31653083-31653247
Coord A exon
chr2:31653248-31655725
Coord C2 exon
chr2:31655726-31659747
Length
2478 bp
Sequences
Splice sites
5' ss Seq
GCGGTACGT
5' ss Score
10.27
3' ss Seq
CTCATTCTTCCCTGTTTCAGATG
3' ss Score
11.48
Exon sequences
Seq C1 exon
AGGTGGAGAAGGAGCTGGGGAAACGAGGCACGAGAGGAGGTGCTGGGAGTATGCTGCAGGCCCCAGAGCTGCCCACCAAGACCAGAACCTGCAGGAGAGCAGCTGAGCAGAAAGATGCGCCTGACACCCCTGAGCTGCTCCACACGAAGGGCCTGGGAGAAAGCG
Seq A exon
GTACGTCTGTCCATCCCACCCCCAAGCCAGGCAGGTGAACAGAAGCTGTCAGTGCAGCTGGCATGGAAGGGCATTAGTCCCTCCTCAGCAGTCCAGCCCAGGGAGGAAGATTCGCTCCTGCCCAGGGGAGCCTTTCAGCAATTGCTTAGACAAGCCGAAAGCTGAGACACCTGCCAAAAAAGCACCCCCATCTTTGCATGTGTTCTTCCCAGCCCTGTGGGCGTCTTCCGGGGCAGTCACAGCACTAAACAACATGGACCCATCAGAGCAGCCCAGGCTCAGTCAGCGCTGGTTTCCTGTGGTCTCTGGAAAGGCTGTCTTCTCCAACTGTTTCCCAGGCTCCACTAGGGCAGTGGGACTGGGTCAGGAGGTGCCTAGAGATGCACAGGGATAGTATGAGCGGCCCTGTGTCTGCAGCTTCCTGCATGCCAGCTAAGCACTGGTACCAGGAAAACAGCATCCTCCTCTCCTGCAGACCCACTAAAGTCAGTTGGCCAGGGGAAGGGGTGCTGGTACCTGAACTCAAAAAGGCCCCCAGGGCTCCCATCATGGGCTGATGGACAGTGGCTTGGTTGAATGGGACCAGGCAAGACAAAGTATGATTCTGATAGGCGTTCATAAGAGGCATTTACTCAGCAGAAACCACATTTCTGGTTTTTTTAAACAGTTGTGATTCTAAACCTATACTTATACTGATTAGAAGCTGACTGGTCAACCCCACAGAACACGTAAGAGTACTCTAGGGACTGTCTTAGCCAGGGTCACTATTGCTGCGATGACTAAAGTCACCGTGACTAAAGAAACCTGGGGAGGAGAGCGTCTCCTTAGCGTATGCTTCCACATTGCAGAAGCATCAAAGATCAGAACAGGAGCTGGAGCAGGGCAGGGACCTGGAGGCAGGAGCTGCTGCAGAGGTCGTGAAGGAGTGCTGCTTACAGGCATGTTCCCCATGGCTTAGTTGGCCTGCTTTCTTATAGAACCTGTGACCACCATCCCGGGGATGGCCCCAGTCACAACAGGCTGGGCGCACCCCATCAGGCACTGGTTAAAACGATGCTCCACAGGTTCGTCTACAGCCTTGTCCCACGGAGGCTCTTACAGTCTCTTCTCAGATGACTGTAGCTGTGTCATAAAGCTATCCAGCACACACAGGTGCCAAAGGAGCTTGTTTGGAAGGTTTGCGTGTGAACTGAGGGTGTTCCTCAGTGTGAATCGCTTGCCGAGCAGTTGTCGGTCACATGTGCTAACACATATCTGTAACTCCGGGTCCTCCTTAGAGACAGAGGAAGTGGTGGCAGGAGAATCCTCAGAAATTTAGGGGCCAGCTAGCATGACATACACAGCAGTGAAAAACAGAGACGCTACCTCAGACAAGCTTGGAAGGAAGGAAGGAAGGACTGGGGTTGTCCTCTGACCTCTCTGTATGCTGCTGCACGGGCACACGTGTGTGTGGCCTTAAAGTTTACATAAACAAGTAAGTCCAAGTTGTAGAGCCATGGATCATCTCCCTCCCCGTGGAGGCCGCACACAAGCTGTCCCGTCCTCCCGTCGGCTCTCATGCTGTGGGGGAGAGGCTGCTGCAGGAGTGTGGGCTAGGAAAGGCCGGTGATGAGCAACTGTGTGTGTGTCTTCCCTCGGTGTCATTACTGACGCTCTGGATAGTCATCTCCTGGTAAGCCAGAGTGCCCCTAATATCTGTGACCCTCAGAGTCTCTCCACCTTCTTCAGTAGGACTGCAGTGTGGAGAGATCGATCCTCTGCTCACCTTGTTCTGATGCTCATCTCTGCTAGTCTTAGGACAGATGTACAGTCTACCTCAGTCCTAGAGGCTGAGGGAAGGAAGTCTCATAGAATTGGCCACAGCGCCGGACAGCACAAAGGCTTTTGTTTGTTTTGTTTTCCAAGACAAGGTCTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCGGGCTGGCCCTGAACTCAGAGATTTGCTTGCCTCTGCCTCCCAAGTGCTGGGATGTAGCCACCTCTGCCCAGCTATGTCACTCATATTTTAAGAACACCCACATGAAGTTTTGTAAAGGCCATCTTTCTCTGTCACAACAGCTGATTGTCATGCCCCCATGGGACAGCTGACATCTTCCCCTCAGCAGGTCTGACCCTTGGCGTTGTCATTCTGCTGACATTGGAGGGACTCCACAACCTTAATAAGTTTTAGAATGAGGAAAGCAGGGTCGTTCCAGCCCTTGCCCCTCTGGGCCCAGGGAGAGACTTGATAGTGACAAGCTCAGACATGATACTGCTGACAAGGCCAGGCTGTAGGGAATGCCACCATTTTGTCTTCTGCCCTCCGGTGGCACTGAGCTCCATGCTGCCTGTGCCATGAAGGCCGAGGGTGCAGAAGCCCATGGGGAGCCTCCCCACAGAGGCCCAGCCAGCCGAGGGCAGTGTTGGCTGGGCGCTGTTGCTCATTCTTCCCTGTTTCAG
Seq C2 exon
ATGCACTGGACAGTGAGCCTGCTGTATCGCCACTGCTTCCTCGGAAAGAGCGCGGGCCCCCAGACGGCAGCCTAAATGAAGATGAGCGCCTTCTCCCCAGAGACAGAAAGACCAACCTGTTCAGCGCTTTGATCAAGAAGAAGAAGAAAATGGCGCCGACGCCCCCTAAGCGCAGCAGTTCCTTCCGAGAGATGGATGGCCAGCCAGACCGCAGAGGGGCTAGTGAGGATGACAGCAGGGAACTCTGCAATGGACCACCAGCTCTCACCTCAGACGCAGCAGAGCCTACCAAGTCCCCAAAGGCCAGCAATGGGGCTGGCGTCCCTAATGGAGCCTTCCGGGAGCCGGGCAACTCAGGCTTCCGTTCTCCCCACATGTGGAAAAAGTCCAGCACACTGACCGGGAGCCGCCTGGCTGCTGCCGAAGAGGAGAGCGGCATGAGCTCCAGTAAGCGCTTCCTGCGTTCTTGTTCGGCCTCCTGCATGCCCCATGGGGCAAGGGACACAGAGTGGCGGTCGGTCACGCTGCCTCGAGACCTGCCGTCTGCTGGCAAGCAGTTTGACTCATCCACCTTTGGAGGGCACAAAAGCGAAAAGCCAGCTCTGCCTCGGAAACGCACCAGTGAGAGCAGGTCTGAGCAGGTGGCCAAAAGCACGGCGATGCCCCCTCCCCGGCTGGTGAAGAAGAACGAGGAGGCTGCTGAAGAAGGCTTCAAAGACACAGAATCCAGCCCTGGCTCCAGCCCTCCCAGCTTGACTCCCAAACTCCTCCGCAGGCAGGTCACTGCCTCTCCTTCCTCTGGCCTCTCTCACAAGGAAGAGGCCACCAAGGGCAGTGCCTCAGGCATGGGGACTCCGGCCACTGCAGAGCCAGCACCCCCCAGCAACAAAGTGGGCCTCAGCAAGGCCTCCTCTGAGGAGATGCGCGTAAGGAGGCACAAGCACAGCTCGGAGTCCCCAGGGAGAGACAAGGGGCGACTGGCTAAGCTCAAGCCTGCCCCGCCGCCTCCTCCTGCCTGCACAGGAAAAGCAGGCAAGCCCGCACAGAGCCCCAGCCAAGAGGCCGGGGAGGCAGGGGGGCCCACAAAGACAAAATGCACGAGTCTGGCTATGGATGCTGTGAACACTGACCCCACCAAGGCCGGCCCACCTGGAGAAGGACTGAGAAAGCCTGTGCCCCCATCTGTGCCAAAGCCCCAGTCGACGGCTAAGCCTCCAGGGACTCCCACCAGCCCGGTCTCCACCCCCTCCACAGCACCAGCTCCTTCACCCCTGGCTGGGGACCAGCAGCCATCTTCTGCCGCCTTCATCCCCCTCATATCAACCCGTGTGTCTCTTAGGAAGACCCGCCAGCCGCCAGAGCGCATTGCCAGTGGCACCATCACCAAGGGTGTGGTTCTGGACAGTACTGAGGCCCTGTGCCTTGCCATCTCCCGGAACTCAGAGCAGATGGCCAGCCACAGTGCTGTACTGGAGGCTGGCAAGAACCTGTACACTTTCTGTGTGAGCTATGTGGACTCTATCCAGCAGATGAGGAACAAGTTTGCCTTCCGTGAGGCTATCAACAAGCTGGAGAGCAACCTCCGAGAGCTGCAGATCTGCCCTGCCACAGCCTCCAGTGGGCCAGCTGCCACCCAAGACTTCAGCAAGCTGCTCAGCTCTGTGAAGGAGATCAGCGACATTGTCCGGAGGTAGCAGCAACCAGTGTATGTCAGCAAGAGATGTTGCAGTTCACAGGGCTCTTGTGCCTATAAAGATGGGGACAGGGGACTGGGGAGCTGGCGTCTTTCCCCAGGAGCTTTAAAGAGAGACAAGCAGAGCCTGAGGGAGACCTGGATGGAGCCTGGTGGAGTTGGCTCTTCCTCCTGTGTTGTGCACCAGCTGCCCTGCACCTTTCCTGTCCAGCCCAGGCGTCAGCCACCTCTCCTCACTGCCTGTGGATGGGTCTCCTGCTCTGAAGACTACATCTGGCCTGCCTGGCCACCAGGCTTCTCACTCCCCGGTGCCTCAGACCCAGCTCCCAGGTCAGCCTGGAGTGCTCTTCCCTGTCCTTGCAGAACGACCTCCTCTGATGGACCTTCTTGTCACCAAGGCATGGGAGCCCCTGTGCTTACTGTACCTGCACCTTTGATGCTTACAAACTGTCCCCGAGAGCCTGTGCTCACTGTGTTTTCATTGGAAGGAAGCTGTCGCTTTAAGGGTCATGAGGTGCTAAAGCCAGGGGCCCAGATGGGTGGGCACTGGAAACAGGAGCTGGGCAGTGTGGTCTGTCACCTGCTCTCAGTATCTTCAGCAGTGTGCCCGGCAGATCTTGGACAGCAAGCTTGAGTTTTATGGGTGGCAGTCACTGGCTGGCTAGGCACATAGCCAGGCCAAACCTAGGCCTCCAAGGGCTCCCCAAAATCTGAATTTCTGAGTAGTCTTCATCCCCTCTCCTGCTCTAAGGTCAGGTCCATCCTCTCTGGTCCTTACCTTGATGACAAGGATCCAGCCTTCTGGTGTTTTTGAGCATTTCAAAGGTCTGCATAGAAAGGAACAGCCACTAGGTACAAACAGGCAGGAATCTGGGCTCTCCTGAGCCCTGACTGCTTCTCAGAACTGCTGCTTAACCACTGAGAACAGTGCTCAGCCCAGAGCTCCTGAGAGCCATGCACATCACGCTGGGGTTGGGTGTCCCTTGCAGACTCAGCCAGGGGGGCCATATCTTCCTCCTAAGGCAGGCAGGACCAGAGCTGAGCACAGGCACAGGTGTGGGCGACTCCTTGACTAACCCAGAGCCGCCAGCCTAGGCCTCGTGCCAGGCTGACCCAAAACAGGGCGCATGCCTAGGCCTTGTACCAGGCTGGAAGACACCTCCACACTCCCTGCTTCTCCACTGCAGGTGTGCTGTGCTGGCCCCAGGCCCACACTGATCACCTAGATGCGGGCCTGGTAGAGATGATTTCCTCTGGATGGTCTTCCATGGTCCTCGTAGCACCTCACCTCGTTACCTCCAAAGGCTGCTCTGCAGCCCAAGGGAGGCTGTGCCACACTGCCAGCGACCTTGAATAGCCAGACACCGCCATCCCCTGACACTGTGCTCACAAGGCCCCTGCTCTGTTGCTGCCGTGGGTGCCACTATATTTTGTATTACACTTTGATATTACACTCTTTTTTAAAATAGACTTGCGCTCTTATAAATGACATGTAAATAGTTCACCACTGTGCCCCCTCTGGCACACCAACAGCATTCCCCTTTTTTCTCAGTCCAGTACATTTTGTTTCTGTATATGACTGTTTTTTGAATCCAAATCTCTCTGTAGTATTTTTTAAATAAATGTTTACAGAACTATCGACAGACTGCTTGGTCTGTGATTCATCTCTGCAAGCCCTCATGTCCCAGCCCGTGTGTCCCGAGCATATCGTTGCCAGCTGCCCAGCTCTTGGCAGCCTCACAGCAGATGGTAGTGTCCTGTGTCGGGCCGGAAGTAGGAGCGGCTAAGCACCTGAGATTCTTGCTGGCGGAGTGAGTCCCTCCCCGGCATGCCTCTGCCTTCAGCCGCTCAGTGCTCTCTCTCTCTCATGTGGCTTCGGGTGCCAGCTGTTAGGCTTCAGTGGACAGTGAACAAACGCCTCGGCAGGCTCCGTGGACTATGCTTCAGTCACTGGAGCTCAGGCAAGGATGCCAAGGCCACAGGCTGGGGTGCCCTGCCACTCCAACAACTCGCCACACAGAAGCTCTGCCTCCCCTGGCTGTCATATGTCATGCATGTTGAAGTGGGTCGGAGTTGTCCAGTGAATCTAGACACTGGCCATCCTGCAGGTCTTCTGTAGCCAATAGGGTCATCCTTGAGTGGCTGTCTAACAGGAGGTTCCAGGGACAGCCTCCACAGCTACCACTTGTGCTTTTGTGTGTGACATGGGCCTAAGAGGGCTCCCAGTGGCCTCAAGCAAGTACTGTTTGCCTGTTTTCTCGATTTCTTGTAAGGCCACAGGAGTGAGACCTGTCACCTTGGCCCAAGCATAAAATACTCCATGTCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026842-Abl1:NM_001112703:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.817
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF089195=F_actin_bind=WD(100=19.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: