GgaINT0125052 @ galGal3
Intron Retention
Gene
ENSGALG00000003875 | ABL1
Description
NA
Coordinates
chr17:6646727-6651119:+
Coord C1 exon
chr17:6646727-6646891
Coord A exon
chr17:6646892-6649419
Coord C2 exon
chr17:6649420-6651119
Length
2528 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
3' ss Seq
CCTTTTTCTTTCCCTTGCAGACC
3' ss Score
14.11
Exon sequences
Seq C1 exon
AGGTGGAGAAGGAATTGGGAAAGAAGGGCATGAGGAGTGTAGTGAGCAATTTCCTTCAGGCCCCAGAGTTACCAACCAAGACACGAACATCGAGGAGAGCTGCTGAAAGCAAAGATGTGAATGAGGGCTTGGAGACTGCACATGCTCGAGGCCAGGGAGAATGTG
Seq A exon
GTAGGTTTTAATTAAAGTCATTATTCCTTCAGGAAATAATAGAAAAACAAAAGGCATGCCTAGGTCTTTGCCTAGGAAAAGCCATGTCTGAAAACAGGTGCCATCTTTGTGTATCAGCATTGTATTTTTGGGTGACAGGTTTGCTTTCTGCGTTCAGAACTCCTTTTATCATTTATTAGAGAAAGGCAGGCTGTTAATCCTGGGACCAGATACAAACATAGAGCATCTGGGAGTCTGAATCCATAGCTGGCTGAGCAGTTGGCACTATACCTGCCATTGCTTATAGAAATCCTAGGAGTTCTTTTAACTTCATGGCAGTTGCCTACAGCTCCCTATAGACCAGAGCCTGAGCACAGCTCTCTGGTCACATTCTCTTCCCATTCCCTGGTAGGAGCTATCAGTGGGATCTCCCACTGCATCTGAGCACTGGGTAATCTGCTGTGTTCAAGCCTCTTTACACTACCACACTGCATAATTTAAAGCAGCACGATTGCTCAGGTTTAGCAAGCCCCATAAGGGAGGATTCTTCACTGTTTCATCATACCAGTTTTGTGCTTGCAGCACTGAAGAGTATTACTCTTGGCAGGTACCAAATATAATTGCAGCAAGGGACAAAGAAGTATTTACAGAATCTTCCATGAAATTAAACTCTATTCAGTCAGTTTCTCCAAGCATTTCTCTTCCATTTTGAGGTAATGAACACAGTGGTAAGACACTGAATTTATACAGTACATTTGTATCCAGTTTGCTTGAAAAATAGCAAGATGAAAACAAAATACAGTGCATGATAAGCACGCCCTGTCTGACCATTCATGTGACTGACCTTGTTTGGGTAACGACAAACTCACCTAGTGGTACATGTTTCAGTAGCAAATGTACATCTCGACAAAGAAGGAAAAAAAACCACACGAGAGGGAGTGTAAAATGTTGGAAAAGTGTCAGTGACTTAAACAGAAAAGAAAGTTATTTACAGAAGGGCTCAGGAATGTACAGATTTATGAACTGACTTGTTTTCTAATGCAAATACAAAGACCCTTCTGTTTCTTTGGGAAAAAGATTTGAATAGTGAGCACAGTATGCCTCTATTTTTATTATAACTTAATTAATGCAACGTAGTGTTAAAGACCAGTGGTAAATCCAGCTTGCTGTATATAGGAGGTATAATTGCCTAGTTTTCTAAGCTTTGAAGTAAAATAACTTCATTTAAATACTTAAGGACTTTGAGAGATTCAAGTGCAGCAGGAATAATATGATTTTAACATTATCCTGGTTATTATTTCAGTCTTTATTGTGAAAAACACATATTTCCCATAGAAGTTGCATTGCAATTTCCTATTCAGTTGTCAGTGTTCTCGTAGGCCAGCAGCTGGAAGCTGGTCCTTCATGAAAGCTGCTAGTTTGCCCTGGGTCTCCACAGCTCCACTGTGTCTGGAGGCAGTACAGCCATGGCCTCCTGAAGAGCTGTAGAAGCTCTTCTGTTTGTTGAGGACTACCTCAGTTTACATATGAATGGTTCAGTGGCACTTGGTCCTTTGGAAGCATGCTCTTTTCCCAAAGTACACAACTGTTTTTCTTGTAATTCTCCCTCCTCAACCAAATCCTACCCTCAGCATGATGATCACCAATATGTGACTAAGAAGCAGCCTTCTTTTGATCTATGTGTCTGCTTCATCTCCCTTCTTACTACCTACTTGAGCTCTAAATGTATATGCTGCCCTAAAGGCATTGCTCTCTTGAATTAGCATGCCGTCTGAGTGCCTGGCCTGGAATGAGACCCCCAGTCAGTCAAATATAGAGACATGCAGGACTCAGTATAAATTTATTATAAACCGCTATTCATTTTTAAATACCTCTTGTAAGTGGAGAAAGGATCACCCCACTGTTTCCTTCTGGAGCAATCCTGCTGAAGGAGGCTGTTATTCCCACTTCCCTCCACTACTGTACTAAGCTGGCGATCTTCGTGGTGATGTGACCCGAGGCATTCAGCTGCCAAGGGATGTCTTGGTTTCTGCTTGTGAAAGAGTTATTTCCATTCCCTATGAAGAATGATATCAGGGAAGGAGGTTAGGAGTATCAGAAGCTAAAAGAACAAGGGTGGATTACATAGATTTCTTATTAATTCAGAGGGTCAGCTGTTCTAAAGGCAGCAACCTCACAGGGGCTGAAGAAGAAGCCTCATTATATTTATCTTCTCACTATGAAGTTTAGACAAGTCTCTAGATGCAAGGATGGGAATCTGAACATAAACAGTTTGTGTTTGTATATTGCTGTTTAAATCAGAAGCCTACAGGGAACATAGTTTGGCAGCCAAGTCTGACCACCTCACAGGTGAGTGTATGAAAGATTAGGGATCATGTTCAGCCTGGGCTTCAGTGTAGCTGTACTTGCATTACTCCTGGTCTGAGGCCGGTTTTCTTTTCAGAACCTGCACCTTTTTGGAGGTGCTGAAATGGTTTAGATCCTGGAAGAAAGCAGCTTGTCCTGGCTGTTGAAGCAAAGCTCAGTAGTCCTTTTTCTTTCCCTTGCAG
Seq C2 exon
ACCCCCTGGACCATGAACCTGCTATTTCTCCTTTGCTGCCACGGAAGGAGAGAGTGGCCCTGGAGAGCAGTTTGAATGAAGATGAGAGGCTGCTTCCAAAAGACAAAAAGCCCAACCTCTTCAGTGCCCTTATCAAGAAGAAGAAGAAAACTGCCCCAACCCCTCCAAAACGGAGCAGCTCCTTCCGAGAGATGGACGGCCACTCGGACCGCAGGGCGGGTGGGGAGGAGGAGTGCAGGGATGCTGGCAATGGAGCTTTCATTGCTCCTCCCACAGAAGCAGCCGACCCCTCCAAGTTTCAGACCCCAAGCAATGGGGCCGGTGTCACCAACGGGGTTGTCGCTGGGAACTCTGGGTTTTTGTCTCCCCACTTACGGAAGAAGTCCAGCACGATGAGCAGCAGCCGGGGGGTGTCTGGTGAGGAGGAGAGCAGTTCCAACTCCAGCAAGCGTTTCTTAAGGTCCTGCTCAGCCTCCTGTGTGCCCCACGGTGCAAAGGACACGGAGTGGAAATCTGTGACTCTGCCTCGGGATCTGCAGTCCACAGGACGCCAGTTTGATTCCTCCACTTTTGGGGGACACAAAAGTGAAAAGCCAGCACTGCCTCGAAAGCGGGCAAATGAGGCCAAGACTGACATTGCTGTCAGGGGGACAGTGACCCCCCCTCCACGGCTGCTTAAGAAAAACGAAGAGACCACTGATGATGTGTTCAAAGACGCGGAGTCGAGTCCTGGCTCCAGCCCACCCACTCTGACTCCAAAACTTGGCCGTAGGCAACCCGTCGTCCCCCCTTCTTCCAGCGTGCTGCACAAGGACGATGGAGTCAAATCCAGTGCCTTAGGTACCACGGCGACAATGGACCAAGGTTCTGCTGCCAAACCCAACCCTGCTGCATTTGCAGGTGCCAACAAAGCTTCTGTTGAGGAGCCGCGGCTGAGGAGGCTCAAGCAGACCTCAGAGTTGGCAGGAAAGGACAAAGGGAAGTTATCGAAGCTGAAGCCAGCCCCTCCAGTTCCACTGTCTTCATCCTCGGTTGGCAAGCCTGGAAAAGTATCTCACAGTCCCAGCCATGAAGCAGCAGCAGATGTGGTGTCTGGTCCTAAATCCAAACAGTTGACTCAGGTTGCAGATGCTGTGAGCAGCGAAGCTGTCAAGCCAAACCAGTCGGGGGAAGGTGTGAAAAAGCTAGGGATCCCTTCTGTACCAAAGCCACAGTCCTCTACAAAGCTGCTGATGAGCACAGCAACCTCAGCTGCCTCTTCCTCATCTGTACCCTCCGCCCCAGGGGGGGACCAGCCGTCATCTACAGCCTTCATCCCTCTCATATCCACCAGGGTCTCTCTGCGGAAGACCCGTCAGCCCCCAGAGAGGATTGCCAGCGGCACCATCACTAAGGGGGTGGTGCTGGAAAGCACCGAGGCTCTACGGCTCGCCATTAGCAAGAACTCTGAACAAATGGCGAGCCACAGCACTGTCTTGGAGGCTGGCAAGAACCTCTACACCTTCTGCGTGAGCTACGTGGACTCCATACAGCAGATGAGGAACAAATTTGCCTTTCGGGAGGCCATCAATAAGCTGGAGAACAACCTGCGGGAGCTTCAGATCTGCCCAGCGACGGCTGGCAGCGGCTCTGCAGCCACGCAGGACTTTAGCAAACTGCTCAGTTCCGTGAAGGAAATCAGCGACATTGTTCAGAGGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003875:ENSGALT00000006164:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.696 A=NA C2=0.797
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF089195=F_actin_bind=WD(100=19.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]