MmuINT0009047 @ mm10
Intron Retention
Gene
ENSMUSG00000026842 | Abl1
Description
c-abl oncogene 1, non-receptor tyrosine kinase [Source:MGI Symbol;Acc:MGI:87859]
Coordinates
chr2:31797563-31803541:+
Coord C1 exon
chr2:31797563-31797727
Coord A exon
chr2:31797728-31800205
Coord C2 exon
chr2:31800206-31803541
Length
2478 bp
Sequences
Splice sites
5' ss Seq
GCGGTACGT
5' ss Score
10.27
3' ss Seq
CTCATTCTTCCCTGTTTCAGATG
3' ss Score
11.48
Exon sequences
Seq C1 exon
AGGTGGAGAAGGAGCTGGGGAAACGAGGCACGAGAGGAGGTGCTGGGAGTATGCTGCAGGCCCCAGAGCTGCCCACCAAGACCAGAACCTGCAGGAGAGCAGCTGAGCAGAAAGATGCGCCTGACACCCCTGAGCTGCTCCACACGAAGGGCCTGGGAGAAAGCG
Seq A exon
GTACGTCTGTCCATCCCACCCCCAAGCCAGGCAGGTGAACAGAAGCTGTCAGTGCAGCTGGCATGGAAGGGCATTAGTCCCTCCTCAGCAGTCCAGCCCAGGGAGGAAGATTCGCTCCTGCCCAGGGGAGCCTTTCAGCAATTGCTTAGACAAGCCGAAAGCTGAGACACCTGCCAAAAAAGCACCCCCATCTTTGCATGTGTTCTTCCCAGCCCTGTGGGCGTCTTCCGGGGCAGTCACAGCACTAAACAACATGGACCCATCAGAGCAGCCCAGGCTCAGTCAGCGCTGGTTTCCTGTGGTCTCTGGAAAGGCTGTCTTCTCCAACTGTTTCCCAGGCTCCACTAGGGCAGTGGGACTGGGTCAGGAGGTGCCTAGAGATGCACAGGGATAGTATGAGCGGCCCTGTGTCTGCAGCTTCCTGCATGCCAGCTAAGCACTGGTACCAGGAAAACAGCATCCTCCTCTCCTGCAGACCCACTAAAGTCAGTTGGCCAGGGGAAGGGGTGCTGGTACCTGAACTCAAAAAGGCCCCCAGGGCTCCCATCATGGGCTGATGGACAGTGGCTTGGTTGAATGGGACCAGGCAAGACAAAGTATGATTCTGATAGGCGTTCATAAGAGGCATTTACTCAGCAGAAACCACATTTCTGGTTTTTTTAAACAGTTGTGATTCTAAACCTATACTTATACTGATTAGAAGCTGACTGGTCAACCCCACAGAACACGTAAGAGTACTCTAGGGACTGTCTTAGCCAGGGTCACTATTGCTGCGATGACTAAAGTCACCGTGACTAAAGAAACCTGGGGAGGAGAGCGTCTCCTTAGCGTATGCTTCCACATTGCAGAAGCATCAAAGATCAGAACAGGAGCTGGAGCAGGGCAGGGACCTGGAGGCAGGAGCTGCTGCAGAGGTCGTGAAGGAGTGCTGCTTACAGGCATGTTCCCCATGGCTTAGTTGGCCTGCTTTCTTATAGAACCTGTGACCACCATCCCGGGGATGGCCCCAGTCACAACAGGCTGGGCGCACCCCATCAGGCACTGGTTAAAACGATGCTCCACAGGTTCGTCTACAGCCTTGTCCCACGGAGGCTCTTACAGTCTCTTCTCAGATGACTGTAGCTGTGTCATAAAGCTATCCAGCACACACAGGTGCCAAAGGAGCTTGTTTGGAAGGTTTGCGTGTGAACTGAGGGTGTTCCTCAGTGTGAATCGCTTGCCGAGCAGTTGTCGGTCACATGTGCTAACACATATCTGTAACTCCGGGTCCTCCTTAGAGACAGAGGAAGTGGTGGCAGGAGAATCCTCAGAAATTTAGGGGCCAGCTAGCATGACATACACAGCAGTGAAAAACAGAGACGCTACCTCAGACAAGCTTGGAAGGAAGGAAGGAAGGACTGGGGTTGTCCTCTGACCTCTCTGTATGCTGCTGCACGGGCACACGTGTGTGTGGCCTTAAAGTTTACATAAACAAGTAAGTCCAAGTTGTAGAGCCATGGATCATCTCCCTCCCCGTGGAGGCCGCACACAAGCTGTCCCGTCCTCCCGTCGGCTCTCATGCTGTGGGGGAGAGGCTGCTGCAGGAGTGTGGGCTAGGAAAGGCCGGTGATGAGCAACTGTGTGTGTGTCTTCCCTCGGTGTCATTACTGACGCTCTGGATAGTCATCTCCTGGTAAGCCAGAGTGCCCCTAATATCTGTGACCCTCAGAGTCTCTCCACCTTCTTCAGTAGGACTGCAGTGTGGAGAGATCGATCCTCTGCTCACCTTGTTCTGATGCTCATCTCTGCTAGTCTTAGGACAGATGTACAGTCTACCTCAGTCCTAGAGGCTGAGGGAAGGAAGTCTCATAGAATTGGCCACAGCGCCGGACAGCACAAAGGCTTTTGTTTGTTTTGTTTTCCAAGACAAGGTCTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCGGGCTGGCCCTGAACTCAGAGATTTGCTTGCCTCTGCCTCCCAAGTGCTGGGATGTAGCCACCTCTGCCCAGCTATGTCACTCATATTTTAAGAACACCCACATGAAGTTTTGTAAAGGCCATCTTTCTCTGTCACAACAGCTGATTGTCATGCCCCCATGGGACAGCTGACATCTTCCCCTCAGCAGGTCTGACCCTTGGCGTTGTCATTCTGCTGACATTGGAGGGACTCCACAACCTTAATAAGTTTTAGAATGAGGAAAGCAGGGTCGTTCCAGCCCTTGCCCCTCTGGGCCCAGGGAGAGACTTGATAGTGACAAGCTCAGACATGATACTGCTGACAAGGCCAGGCTGTAGGGAATGCCACCATTTTGTCTTCTGCCCTCCGGTGGCACTGAGCTCCATGCTGCCTGTGCCATGAAGGCCGAGGGTGCAGAAGCCCATGGGGAGCCTCCCCACAGAGGCCCAGCCAGCCGAGGGCAGTGTTGGCTGGGCGCTGTTGCTCATTCTTCCCTGTTTCAG
Seq C2 exon
ATGCACTGGACAGTGAGCCTGCTGTATCGCCACTGCTTCCTCGGAAAGAGCGCGGGCCCCCAGACGGCAGCCTAAATGAAGATGAGCGCCTTCTCCCCAGAGACAGAAAGACCAACCTGTTCAGCGCTTTGATCAAGAAGAAGAAGAAAATGGCGCCGACGCCCCCTAAGCGCAGCAGTTCCTTCCGAGAGATGGATGGCCAGCCAGACCGCAGAGGGGCTAGTGAGGATGACAGCAGGGAACTCTGCAATGGACCACCAGCTCTCACCTCAGACGCAGCAGAGCCTACCAAGTCCCCAAAGGCCAGCAATGGGGCTGGCGTCCCTAATGGAGCCTTCCGGGAGCCGGGCAACTCAGGCTTCCGTTCTCCCCACATGTGGAAAAAGTCCAGCACACTGACCGGGAGCCGCCTGGCTGCTGCCGAAGAGGAGAGCGGCATGAGCTCCAGTAAGCGCTTCCTGCGTTCTTGTTCGGCCTCCTGCATGCCCCATGGGGCAAGGGACACAGAGTGGCGGTCGGTCACGCTGCCTCGAGACCTGCCGTCTGCTGGCAAGCAGTTTGACTCATCCACCTTTGGAGGGCACAAAAGCGAAAAGCCAGCTCTGCCTCGGAAACGCACCAGTGAGAGCAGGTCTGAGCAGGTGGCCAAAAGCACGGCGATGCCCCCTCCCCGGCTGGTGAAGAAGAACGAGGAGGCTGCTGAAGAAGGCTTCAAAGACACAGAATCCAGCCCTGGCTCCAGCCCTCCCAGCTTGACTCCCAAACTCCTCCGCAGGCAGGTCACTGCCTCTCCTTCCTCTGGCCTCTCTCACAAGGAAGAGGCCACCAAGGGCAGTGCCTCAGGCATGGGGACTCCGGCCACTGCAGAGCCAGCACCCCCCAGCAACAAAGTGGGCCTCAGCAAGGCCTCCTCTGAGGAGATGCGCGTAAGGAGGCACAAGCACAGCTCGGAGTCCCCAGGGAGAGACAAGGGGCGACTGGCTAAGCTCAAGCCTGCCCCGCCGCCTCCTCCTGCCTGCACAGGAAAAGCAGGCAAGCCCGCACAGAGCCCCAGCCAAGAGGCCGGGGAGGCAGGGGGGCCCACAAAGACAAAATGCACGAGTCTGGCTATGGATGCTGTGAACACTGACCCCACCAAGGCCGGCCCACCTGGAGAAGGACTGAGAAAGCCTGTGCCCCCATCTGTGCCAAAGCCCCAGTCGACGGCTAAGCCTCCAGGGACTCCCACCAGCCCGGTCTCCACCCCCTCCACAGCACCAGCTCCTTCACCCCTGGCTGGGGACCAGCAGCCATCTTCTGCCGCCTTCATCCCCCTCATATCAACCCGTGTGTCTCTTAGGAAGACCCGCCAGCCGCCAGAGCGCATTGCCAGTGGCACCATCACCAAGGGTGTGGTTCTGGACAGTACTGAGGCCCTGTGCCTTGCCATCTCCCGGAACTCAGAGCAGATGGCCAGCCACAGTGCTGTACTGGAGGCTGGCAAGAACCTGTACACTTTCTGTGTGAGCTATGTGGACTCTATCCAGCAGATGAGGAACAAGTTTGCCTTCCGTGAGGCTATCAACAAGCTGGAGAGCAACCTCCGAGAGCTGCAGATCTGCCCTGCCACAGCCTCCAGTGGGCCAGCTGCCACCCAAGACTTCAGCAAGCTGCTCAGCTCTGTGAAGGAGATCAGCGACATTGTCCGGAGGTAGCAGCAACCAGTGTATGTCAGCAAGAGATGTTGCAGTTCACAGGGCTCTTGTGCCTATAAAGATGGGGACAGGGGACTGGGGAGCTGGCGTCTTTCCCCAGGAGCTTTAAAGAGAGACAAGCAGAGCCTGAGGGAGACCTGGATGGAGCCTGGTGGAGTTGGCTCTTCCTCCTGTGTTGTGCACCAGCTGCCCTGCACCTTTCCTGTCCAGCCCAGGCGTCAGCCACCTCTCCTCACTGCCTGTGGATGGGTCTCCTGCTCTGAAGACTACATCTGGCCTGCCTGGCCACCAGGCTTCTCACTCCCCGGTGCCTCAGACCCAGCTCCCAGGTCAGCCTGGAGTGCTCTTCCCTGTCCTTGCAGAACGACCTCCTCTGATGGACCTTCTTGTCACCAAGGCATGGGAGCCCCTGTGCTTACTGTACCTGCACCTTTGATGCTTACAAACTGTCCCCGAGAGCCTGTGCTCACTGTGTTTTCATTGGAAGGAAGCTGTCGCTTTAAGGGTCATGAGGTGCTAAAGCCAGGGGCCCAGATGGGTGGGCACTGGAAACAGGAGCTGGGCAGTGTGGTCTGTCACCTGCTCTCAGTATCTTCAGCAGTGTGCCCGGCAGATCTTGGACAGCAAGCTTGAGTTTTATGGGTGGCAGTCACTGGCTGGCTAGGCACATAGCCAGGCCAAACCTAGGCCTCCAAGGGCTCCCCAAAATCTGAATTTCTGAGTAGTCTTCATCCCCTCTCCTGCTCTAAGGTCAGGTCCATCCTCTCTGGTCCTTACCTTGATGACAAGGATCCAGCCTTCTGGTGTTTTTGAGCATTTCAAAGGTCTGCATAGAAAGGAACAGCCACTAGGTACAAACAGGCAGGAATCTGGGCTCTCCTGAGCCCTGACTGCTTCTCAGAACTGCTGCTTAACCACTGAGAACAGTGCTCAGCCCAGAGCTCCTGAGAGCCATGCACATCACGCTGGGGTTGGGTGTCCCTTGCAGACTCAGCCAGGGGGGCCATATCTTCCTCCTAAGGCAGGCAGGACCAGAGCTGAGCACAGGCACAGGTGTGGGCGACTCCTTGACTAACCCAGAGCCGCCAGCCTAGGCCTCGTGCCAGGCTGACCCAAAACAGGGCGCATGCCTAGGCCTTGTACCAGGCTGGAAGACACCTCCACACTCCCTGCTTCTCCACTGCAGGTGTGCTGTGCTGGCCCCAGGCCCACACTGATCACCTAGATGCGGGCCTGGTAGAGATGATTTCCTCTGGATGGTCTTCCATGGTCCTCGTAGCACCTCACCTCGTTACCTCCAAAGGCTGCTCTGCAGCCCAAGGGAGGCTGTGCCACACTGCCAGCGACCTTGAATAGCCAGACACCGCCATCCCCTGACACTGTGCTCACAAGGCCCCTGCTCTGTTGCTGCCGTGGGTGCCACTATATTTTGTATTACACTTTGATATTACACTCTTTTTTAAAATAGACTTGCGCTCTTATAAATGACATGTAAATAGTTCACCACTGTGCCCCCTCTGGCACACCAACAGCATTCCCCTTTTTTCTCAGTCCAGTACATTTTGTTTCTGTATATGACTGTTTTTTGAATCCAAATCTCTCTGTAGTATTTTTTAAATAAATGTTTACAGAACTATCGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026842:ENSMUST00000075759:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.817
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF089195=F_actin_bind=WD(100=19.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types