HsaINT1000286 @ hg38
Intron Retention
Gene
ENSG00000097007 | ABL1
Description
ABL proto-oncogene 1, non-receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:76]
Coordinates
chr9:130880500-130887675:+
Coord C1 exon
chr9:130880500-130880664
Coord A exon
chr9:130880665-130883968
Coord C2 exon
chr9:130883969-130887675
Length
3304 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
CTCTTCCCCTTGCGTTTCAGATC
3' ss Score
11.61
Exon sequences
Seq C1 exon
AAGTGGAAAAGGAGCTGGGGAAACAAGGCGTCCGTGGGGCTGTGAGTACCTTGCTGCAGGCCCCAGAGCTGCCCACCAAGACGAGGACCTCCAGGAGAGCTGCAGAGCACAGAGACACCACTGACGTGCCTGAGATGCCTCACTCCAAGGGCCAGGGAGAGAGCG
Seq A exon
GTAAGTCCCCCGCTTCCCCCAACCCCACTGCTCTTCCCTTCCCTGCCAGAGGCTACATTCAGGCCATCATAGGCCAACGGGAAGCTGTGAATGGAGCCCGCACAGAAGGGCAGCCATGGCCTTTGTCAATGGTTCAGCTTCGGAAGGAGGAAGGTTCTCCTCTCCCCACCTGCCTCCTATCCCCTCCCTCTGAGAGTCCCCGAGGAGCATAGGCTCCAGCAGTGAGTTCAGTCCTGTAGGCAGAGGTGCTTCTGAAGCCCGCCAAGGAGCTAGCCCATCTCCCACCTATTACCCGCGGCATCTGTGGTTGCTGTCTCAGAGCAGATTCAACAATAGTAAGCACCAGGCTGCGTGACAAGCAGCTCACGGTGAAGGCACTGATGTGAGAAGCTCGCTGCAGCCAGGTGGAACCAGGACACGCACATGGACAGAACCCGTGTCCTGGTGGTCTCTGGGAAGAGCATCTTTCTGGTGCCATTGCCTAGGCGAGCAAGGGAGTTGGGATCAGCTCAGGAGGGGGTCTCAAGACACTAGCAAAAATAATAATGGCCAACATTTATGTAGTGTGCCTACTACAGGCCAGGCTCTGTTCTATGTTCATGGTTGACCCCCAGAACCAGCAGTCCAGGTTCTGCTGCAGACCAGCTGAACAAAAGCATTGAGGGGTGTATTAGTCTGTTTTCATGCTGCTAATAAAGGTATACCCAAGACTGGGTAATTTATAAAGGAAAGAGGTTTCACTGACTCACAGTTCCACATGGCTGGGGAGGCCTCACAATCATGGCTGAAGGTGAATGAGGAGCAAGGTCACATCTTACTTGGCGGCAGGCAAGAGAGCTTGTGCAGGGGAAGTCCGCTTTATAAAACCATCAGATCTCGTGAGACTTATTCACTACCACGAGAATGTGGGAGAAACCTCCCCATGATTCATTGATCTCCACCTGACCCCACCGTTGACACGTGGGGCTTATTACAATTCAAGGTGAGATTTGGGTGGGGACTCAGCCAACCCATATTGGAGGTGGGGGGTAGGCCAAGCATCTGGGTTCACAGAGGATCCTGGGGATGGCAATGGTGGACTCCATTCTAATGGACTGCAGACTGGGTACATGTGAAGGGACTGGACAAAGCCCTACTTCTTGAAGATTTATGGTGGGATGTTTACTGACAGCAGAATCTATAAACCTGAGTTTTATCACGTACTCTCATTAGTAAAAAAAAAACAAAAAAAAACAGAACATGCAGCCCATATATATGGTATATAAAGTACGTATGTCCACTACTGTAGGAGTAGAGTGCGTATGTTATGTACCAAAACGCACATTTAAAAGGCTTGCATGCTAAATAAGTCCAAATTTGCAATACTTCCCGCCCCGCTGGGCCATCTCACTCACCTACTTGGAGGTTATGGCGTATAGACTCTCCAGAATCTTCCACCCTTCCTCCTCTTATCGGTTTTCCTGATTTCAGGTGGCTGAGCAGTAGGGAGGAGAGGCCTCTGGGAACGCTGTGCTTATTAAGAACCCAGTGATCAGCAGTCATGTTCATTTACGCCCGTCAGTTTCATCTGAGGGGTATTTTGATAGTGATCTCTTGGTGAGCCGAGGGTGTCAATTAACTGCTCAGTGCTGAAACTGAGTGGTGCATAATTCATTGCAATTTCACTCTCCTGGCCTCCTTCCACTAGATTAAAGTTTTGGGAGGGCTTTGGTGTTCCCTGATTCAGATGTCCCGCGTGCTGCCTTGGGTTCTGATAAATGCATACTGGTACCTCTGTTGAGTTACAGGTGCCAACAGAAAACCTCTTCTTGCAAGCTGACCTCTGAGGGAGAATTCTGTTACTCACTAGCAGGAGCTTGGCAACACCAAAAAGATTTCCTTTTTTTTTTGAGATGGAGTCTCACTCTGTTGCCAGGCTGGAGTGCAATGGCATGATACCAGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCATCCTCCTGAGTAGCTGGGACTACAGGCGTGTGCCACCACACCCAGCTAATTTTTGCATTTTTTAGTAGAGACGGGGTTTCATCATGTTGGCCAGGATGGTCTCTATCTCTTGACCTCATGATCCGCCCACCTCAGCCTCCCAAAGTGCTGGGATGACAGGCTTGAGCCACCGCGCCTGGCTACCAGAAAGATTTCTTATGAGCTATGATTCATATTTAAAGAGTGCCCATTAAAAAACTGTTGGCCGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTAGGAGGCCGAGGTCAGCGAATCACAAGGTCAGGCTCCCGTGGCACAAGCTGGGGGCTGCCCCCACCCCATGCTCCCCAGAGGAGCACCCAAGCGTCTGGGCTCAGACAGGCCTGGATCTGATAACCGGCTCTGATGCCACCATCCCTGAGGCCAGGCAAGTCCCAGCCGGGCTACAGCACTGTTGTGAGAATGCAGATGAGGTTGTAAAGGTGAAGCACGTGTCACGCTTCTCTCAATAAAGCCATCATTGCTGTTAGGATTGTCATTAGGAAAGGCTTTGGGCCGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTAACCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAATTAGCCAGGCGTGGTAGCGGGTGCCTATAGTCCTAGCTACTTGGGAGGCTGAGGCAAGAGAACCATTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCTGAGATCGTGCCACTGCACTCCAGCGTAGGCAACAAGCGAGACTCCAACTCAAAAAAAAAAAAAAACCACACACACGCTTTGGTCTCTTTCCCTGAAGATGGGAACAAAAAGCTGGACGGCCCTGGCCTCTTCATCCCTGCACTGGTTTACTTGAAGGCAGCAGCCCCCCACCCACCCACATCACTCTCTAGTGAGTATAAAAACGATGACAAGGCCAAGCAAAGGGTCAAAACCTGTGGCTCTCCTGCCAGCCAGCTAGCCGAGAGGCCTATGAGGAGCTCTGGGAATAAGGGGCTGTGTCCCACAGTGGGGAAGGGACAATGGGCCATTATGCACAGGAGATAAGAAGGGATGACCTTTGACAATTTTTTTGTTTGTTTGTTTGTTTGTTTTGAGATGGAGTCTCACTCTGTCTCCTGGGCTGGAGTGCAGCAGTGGCACTCTGCCTCCCGGGTTCAAGCGATTCTCCTCTGTCAGCCTCTAGAGTTGTCTGGAGTTGTCAGCTCTTCCCCTTGCGTTTCAG
Seq C2 exon
ATCCTCTGGACCATGAGCCTGCCGTGTCTCCATTGCTCCCTCGAAAAGAGCGAGGTCCCCCGGAGGGCGGCCTGAATGAAGATGAGCGCCTTCTCCCCAAAGACAAAAAGACCAACTTGTTCAGCGCCTTGATCAAGAAGAAGAAGAAGACAGCCCCAACCCCTCCCAAACGCAGCAGCTCCTTCCGGGAGATGGACGGCCAGCCGGAGCGCAGAGGGGCCGGCGAGGAAGAGGGCCGAGACATCAGCAACGGGGCACTGGCTTTCACCCCCTTGGACACAGCTGACCCAGCCAAGTCCCCAAAGCCCAGCAATGGGGCTGGGGTCCCCAATGGAGCCCTCCGGGAGTCCGGGGGCTCAGGCTTCCGGTCTCCCCACCTGTGGAAGAAGTCCAGCACGCTGACCAGCAGCCGCCTAGCCACCGGCGAGGAGGAGGGCGGTGGCAGCTCCAGCAAGCGCTTCCTGCGCTCTTGCTCCGCCTCCTGCGTTCCCCATGGGGCCAAGGACACGGAGTGGAGGTCAGTCACGCTGCCTCGGGACTTGCAGTCCACGGGAAGACAGTTTGACTCGTCCACATTTGGAGGGCACAAAAGTGAGAAGCCGGCTCTGCCTCGGAAGAGGGCAGGGGAGAACAGGTCTGACCAGGTGACCCGAGGCACAGTAACGCCTCCCCCCAGGCTGGTGAAAAAGAATGAGGAAGCTGCTGATGAGGTCTTCAAAGACATCATGGAGTCCAGCCCGGGCTCCAGCCCGCCCAACCTGACTCCAAAACCCCTCCGGCGGCAGGTCACCGTGGCCCCTGCCTCGGGCCTCCCCCACAAGGAAGAAGCTGGAAAGGGCAGTGCCTTAGGGACCCCTGCTGCAGCTGAGCCAGTGACCCCCACCAGCAAAGCAGGCTCAGGTGCACCAGGGGGCACCAGCAAGGGCCCCGCCGAGGAGTCCAGAGTGAGGAGGCACAAGCACTCCTCTGAGTCGCCAGGGAGGGACAAGGGGAAATTGTCCAGGCTCAAACCTGCCCCGCCGCCCCCACCAGCAGCCTCTGCAGGGAAGGCTGGAGGAAAGCCCTCGCAGAGCCCGAGCCAGGAGGCGGCCGGGGAGGCAGTCCTGGGCGCAAAGACAAAAGCCACGAGTCTGGTTGATGCTGTGAACAGTGACGCTGCCAAGCCCAGCCAGCCGGGAGAGGGCCTCAAAAAGCCCGTGCTCCCGGCCACTCCAAAGCCACAGTCCGCCAAGCCGTCGGGGACCCCCATCAGCCCAGCCCCCGTTCCCTCCACGTTGCCATCAGCATCCTCGGCCCTGGCAGGGGACCAGCCGTCTTCCACCGCCTTCATCCCTCTCATATCAACCCGAGTGTCTCTTCGGAAAACCCGCCAGCCTCCAGAGCGGATCGCCAGCGGCGCCATCACCAAGGGCGTGGTCCTGGACAGCACCGAGGCGCTGTGCCTCGCCATCTCTAGGAACTCCGAGCAGATGGCCAGCCACAGCGCAGTGCTGGAGGCCGGCAAAAACCTCTACACGTTCTGCGTGAGCTATGTGGATTCCATCCAGCAAATGAGGAACAAGTTTGCCTTCCGAGAGGCCATCAACAAACTGGAGAATAATCTCCGGGAGCTTCAGATCTGCCCGGCGACAGCAGGCAGTGGTCCAGCGGCCACTCAGGACTTCAGCAAGCTCCTCAGTTCGGTGAAGGAAATCAGTGACATAGTGCAGAGGTAGCAGCAGTCAGGGGTCAGGTGTCAGGCCCGTCGGAGCTGCCTGCAGCACATGCGGGCTCGCCCATACCCGTGACAGTGGCTGACAAGGGACTAGTGAGTCAGCACCTTGGCCCAGGAGCTCTGCGCCAGGCAGAGCTGAGGGCCCTGTGGAGTCCAGCTCTACTACCTACGTTTGCACCGCCTGCCCTCCCGCACCTTCCTCCTCCCCGCTCCGTCTCTGTCCTCGAATTTTATCTGTGGAGTTCCTGCTCCGTGGACTGCAGTCGGCATGCCAGGACCCGCCAGCCCCGCTCCCACCTAGTGCCCCAGACTGAGCTCTCCAGGCCAGGTGGGAACGGCTGATGTGGACTGTCTTTTTCATTTTTTTCTCTCTGGAGCCCCTCCTCCCCCGGCTGGGCCTCCTTCTTCCACTTCTCCAAGAATGGAAGCCTGAACTGAGGCCTTGTGTGTCAGGCCCTCTGCCTGCACTCCCTGGCCTTGCCCGTCGTGTGCTGAAGACATGTTTCAAGAACCGCATTTCGGGAAGGGCATGCACGGGCATGCACACGGCTGGTCACTCTGCCCTCTGCTGCTGCCCGGGGTGGGGTGCACTCGCCATTTCCTCACGTGCAGGACAGCTCTTGATTTGGGTGGAAAACAGGGTGCTAAAGCCAACCAGCCTTTGGGTCCTGGGCAGGTGGGAGCTGAAAAGGATCGAGGCATGGGGCATGTCCTTTCCATCTGTCCACATCCCCAGAGCCCAGCTCTTGCTCTCTTGTGACGTGCACTGTGAATCCTGGCAAGAAAGCTTGAGTCTCAAGGGTGGCAGGTCACTGTCACTGCCGACATCCCTCCCCCAGCAGAATGGAGGCAGGGGACAAGGGAGGCAGTGGCTAGTGGGGTGAACAGCTGGTGCCAAATAGCCCCAGACTGGGCCCAGGCAGGTCTGCAAGGGCCCAGAGTGAACCGTCCTTTCACACATCTGGGTGCCCTGAAAGGGCCCTTCCCCTCCCCCACTCCTCTAAGACAAAGTAGATTCTTACAAGGCCCTTTCCTTTGGAACAAGACAGCCTTCACTTTTCTGAGTTCTTGAAGCATTTCAAAGCCCTGCCTCTGTGTAGCCGCCCTGAGAGAGAATAGAGCTGCCACTGGGCACCTGCGCACAGGTGGGAGGAAAGGGCCTGGCCAGTCCTGGTCCTGGCTGCACTCTTGAACTGGGCGAATGTCTTATTTAATTACCGTGAGTGACATAGCCTCATGTTCTGTGGGGGTCATCAGGGAGGGTTAGGAAAACCACAAACGGAGCCCCTGAAAGCCTCACGTATTTCACAGAGCACGCCTGCCATCTTCTCCCCGAGGCTGCCCCAGGCCGGAGCCCAGATACGGGGGCTGTGACTCTGGGCAGGGACCCGGGGTCTCCTGGACCTTGACAGAGCAGCTAACTCCGAGAGCAGTGGGCAGGTGGCCGCCCCTGAGGCTTCACGCCGGGAGAAGCCACCTTCCCACCCCTTCATACCGCCTCGTGCCAGCAGCCTCGCACAGGCCCTAGCTTTACGCTCATCACCTAAACTTGTACTTTATTTTTCTGATAGAAATGGTTTCCTCTGGATCGTTTTATGCGGTTCTTACAGCACATCACCTCTTTGCCCCCGACGGCTGTGACGCAGCCGGAGGGAGGCACTAGTCACCGACAGCGGCCTTGAAGACAGAGCAAAGCGCCCACCCAGGTCCCCCGACTGCCTGTCTCCATGAGGTACTGGTCCCTTCCTTTTGTTAACGTGATGTGCCACTATATTTTACACGTATCTCTTGGTATGCATCTTTTATAGACGCTCTTTTCTAAGTGGCGTGTGCATAGCGTCCTGCCCTGCCCCCTCGGGGGCCTGTGGTGGCTCCCCCTCTGCTTCTCGGGGTCCAGTGCATTTTGTTTCTGTATATGATTCTCTGTGGTTTTTTTTGAATCCAAATCTGTCCTCTGTAGTATTTTTTAAATAAATCAGTGTTTACATTAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000097007:ENST00000318560:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.788
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF089195=F_actin_bind=WD(100=19.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains