BtaINT0012113 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017976 | ABL1
Description
Bos taurus c-abl oncogene 1, non-receptor tyrosine kinase (ABL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206860]
Coordinates
chr11:101145037-101150880:+
Coord C1 exon
chr11:101145037-101145201
Coord A exon
chr11:101145202-101149159
Coord C2 exon
chr11:101149160-101150880
Length
3958 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
CTCTTCCCTGTGTGTTTCAGATC
3' ss Score
12.15
Exon sequences
Seq C1 exon
AAGTGGAAAAGGAGTTGGGGAAGAAAGGCATGCGAGGGGTTGCAGGTACCCTGCTGCAGGCCCCAGAACTGCCCACCAAGACGAGAACCTCCAGGAGAGCTGCTGAGCACAAAGACAGCCCCGACATGCCCGAGACACCCCACTCCAAGGGCCCAGGAGAGACTG
Seq A exon
GTATGTGCCCACCCCCCACCCGCCTCGGGGGCTCCAGGGAGTCGACTCTAAACTGAAAGGCAGGCACATCCCTCATGAGTGGGCCAGCTGCAAAGAGAGGAAAGTTCTCCTTTTCTCTGCACTCTCTACCCACCACACCCCTGCCCCCATCAGGTAGGAGCCATTGCTTTGGCAGTCAGTCTAGTCAGATAGGCAGAGACATTCATAAAACCTACCAGGAACAAACCCACCTTTTCATGTATCATTCACATTATTTGTGGCTGTTCTGCATTGTGGACAGATAAAGCAATAATAAACACTGAACCAAACAAAGAGCAGCTCGTTGTGAAAGCACTGATACGAAAAGCTCACTGGTGCTGACGGAGCCATGAGACCCCCGTGGCAGAGCTGGGGTCCTCTTGTGGTCCCTGAGAAGAGACTCTGGTGCTGTCCCCTTGACGAGCGAGGGCGGTGGGAGCACTGCAGGAGGGGTTAACAGGAGCAAACATGGATCCAATGCTTCCTGTGTGCCAGGCTCTGCTCTGAGCGAGGCTGCTCTGGTTTTGCAGTTGCCGCAACCGAAAAAAAAAAATACAGAAGTCTGGATTCCAGAGCAGACCAACTGAGTGGAGATGTCTGCAGTGGGCCAGGTGTCTGGGTTTTTAGCTGCTTCTAGGGGATTGGTGTGATGGGCCACACACTCTGGGTGAATGGGAAGGGACAGGACAAAGCCAGAATCTACAAGACCCCATGATTCCAATTTTTTTCATCATGTTGTTCAGTGACTCAGTTGTGTCCGACTCTTTGCAGCCCTGTGGACTGCAGCACGCCAGGCTTCCCTGTCCTTCACCATTTCCTAGAACTTGGTCAGACTCATGTCCATTGAATCAGTGATGCCATCCAACCGTGTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCTTCAATCTTGCCCAGCATCAGAGTCTTTTCTAATGAATCGGTTCTTGGTATCAGGTGGCCAAAGTATTGGAGCTTCAGCTTCAGCATCAGTCCTTCCAATGAATATTCAGGCTTGATTTCCTTTAGGATGGACTGGTTTGATCTCCTTGCTTATTCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAATTCAGAAGCATCAATTTTTCAACATTCAGCCTTCTTTATGATCCAACTCTCAAATCCATATATGATGACTGGAAAAACCATAGCTTCGACTATATGGACCTTTATTGGCAAAGTGATATCTGTGCTATTTAATACACTGTTTAGGTTTGTCATAGCTTTTCTTCCAAGGAGCAAGCATCTTTTAATTTCATGGCTGCAGTCACCATCTTCAGTGATTTTGGAGCCTAAGAAAATAAAGTCTCTCATTGTTTCCCCATCTATTTGCCATGAAGTGATGGGACCCGATGCCATGATCTTCATTTTTTGGATGTTGAGTTTTAAGCAAGCTTTTTCAGTCTCCTTTTTCACTTTCATCAAGAGGCTTTTTAGCTCCTCTTCGCTTTCTGCCATAAAGGTGCTGTATCTGAGGTTACTGATATTTCTCCCGGCAATCTTGATTCCAGCTTGTGCTTTATCCAGCCCAGCATTTTGCATGATGTACTCTGCATATAAGTTAAATAAGCAGGGTGGCAATATACAGCCTTAACATACTCCCTTCCCAATTTGGACCTAGTTTGTTGTTGCATCGTCTGGTTCTAACTGTTGCTTCTTGACCTGCATACAGGTTTCTCAGGAGGCAAGTAAGGTGGTCTGGTATATCCCAGCTGTTCCACAGTTTGTTGTGATTCACACAAAGGCTTTAGCATAGTCAATGAAGCAGCAGTAGATGTTTTTCTGGAATTTTCTTGCTTTTTCTATGATCCAGCAGATGTTGGCAATTTGATCTCTGTTTCCTCTGCCTTTTCTAAATCCAGCTTGAACATCTGGAAGTTTTCTGTTCATGTGCTGTTGAAGCCTAGCTTGGAGAATTTTGGGCAGTACTTTGCTAGCGTGTGAGATGAGTGCAATTGTGCAGTAGTTTGAACGTTCTTTGACATTGCCTTTCTTTTGGATTGGAGTGAAAACTGACCTTTTCCATTCCTGTGGCCACTGCTGAATTTTCCAAATTTGCTGACACATTGAGTACACCACTTTCACACAACATCTTTCAGGATTTGAAATAGCTCAACTGGAATTCTATCATTCCACTAGCTTTGTTTGTAGAGATGCTTCCTAAGGCCCACTTGACTTCTCATTCCAGAATGTCTGGTTCTAGGTGAGTGATCACACCATCATGGTCATCTGGGTTATTAAGATCTTTTTTGTACAGTTCTTCTGTGTATTCTTGCCACCTCTTCTTAATATCTTCTACTTCTTTTAGGTCCATACTATTTCTGTCCTTTATTAAGCCCATCTTTGCATGAAATGTTCCCTTGGTATCTCTAATTTTCCTGAAGAGATCTCTAGTCTTTCCCATTCTATTGTTTTCCTCTATTTCTTCACATTGATCACTTAGAATTTTCCACAGTTTGTTGTGATTCACACAGTCAAAGGCTTTAGCATAGTCAATGAAGCAGCAGTAGATGTTTTTCTGGAATTTTCTTGCTTTTTCTATGATCCAGCAGATGTTGGCAATTTGATCTCTGATTCCTCTGCCTTTTCTAAATACAGCTTGAACATTTGGAAGTTTTCGGATTTCGTATCTCTCCTTGCTGTTCTTTAATCATGTACCCATATTTTAAAAGTTGAATGTGTAGCTCCTATATATAAGTATTGTATAGGTACTGCTGCACAAATATATTTACTATGAAATATAGCAAAAATATACACTTAAAAGGTTTACCTAAGAGATAAATGATGCTGCGCTTTCTGCACACTCCCGGGACCGTTGTACTTACCCTGCTTCGACAGCATGTAGACTATGTAGAACCTGGCCCCTCATCCTTCTGGTAGTCATCCCGACGTCAGGAAGTGGGACAGCGGTGGGGAGGAGGGGCCACTCTGAGAACTTGCGGCTTATTAAAAGGCCAGTGATAAGCCATCATGTTCATTTACCCCCCATCAGTATTCATCTGAGGGGCATTCTGATATGTAATCTCATGGCGCGCCAAGAGAGTCAATTAGCTGTTCAGCCCGTGAAACAGAGCTGTGCATAATTCATTAGAAATTCACTCTCTTCGCCTTCCTCCGACGGGGCTGAGGTCTGTGGGGGGCCTCGACTTCCCCGGATCCGGGAGTCCTGTGTGCCGCCTGCTGTTCTGACAGATGCCCCGTCCCTCAGCGTCCCAGGTGCTGACGGCCACCGCGCCGCTGCCGCCCTCGGAGGGAGAGCTCTGTCACTCACTCGCGGGGAGCTTGGCAACGCCAGAAAGATTTCTTAGGCACTGTTATTCATATTTAAAGAATGCCCATTTAAAAGTTTTAAAAGGTCACCCTTATAGTTCCCCGAGCATAATAGCCCGTTGTCACTGCACTCCGTGGCACGCGGCCCCCCTCCCTCCTGCCCGGCCTCGCAGGAGCCGCGAGCAGCCGCCTGGTCAGAGAGGCCCAGCTCCTGACCCTGTGCTTGGCCTCGTCTGCCTTGTACCCTCCAGATGGTGGTGTGCAGGGGCCTCTGCGGCTTTAACAGGGGTGGGGCGGTGGGCTTGGGTGCCCCAGCTTTTCTGTTGTCTTCAAGGAGAGAGACTTTAGCTCTGCCCAATAATAACAACACCAACATACAGTGACAATAGCTACTGAGGATTTCGTGCCAAGAGCTGTGATAAATGCCCCACATCCATTCCATTCTCACGGCAGCACTCTGGGTAGCTCTGTTGTGCTCCGTTTTATCGATGAGAAAGCTGAGGGTGAGCAGAGAGAAGTCGCTCGCCAGGGGCGAGCAGCCCAACCACACACAGAGCCGCTCTGTGAGGACAGGCCGGCCGGCCCAGGTGACGCTGGGCTCATTGCTTCTGGCCTGGACTCGTTCAGCTCTTCCCTGTGTGTTTCAG
Seq C2 exon
ATCCTGTGGACCACGAACCCGCTGTATCTCCACTGCTCCCTCGAAAAGAACGGGGTCCTCCGGATGGCAGCCTCAATGAGGATGAGCGCCTGCTTCCCAAAGACAAGAAGACCAACCTGTTCAGCGCCTTGATCAAGAAGAAGAAGAAAACCGCCCCAACCCCTCCCAAACGCAGCAGCTCCTTCCGGGAGATGGATGGCCCGCCTGAGCGGAAAGCGGCCAGCGAGGAGGAAGGTCGTGAAATCAGCAACGGGGCGCTGGCACCGGCACCCCCGGATGCAGTGGAGTCGGCCAAGTCCCCAAAGCCCAGCGGCGGGGCCGGGGTCCCCAACGGAGCCTTCCGGGAGTCTGGGGGCGCGGGCTTCCGGTCGCCCCACCTGTGGAAAAAGTCCAGCACTCTGACCAGCAGCCGGCTGGCTGCCGGTGAAGAGGAGAGCGGCAGCGGCGCCAGCAAGCGCTTCCTGAGGTCCTGCTCGGCCTCCTGCGTGCCCCACGGCGCCAAGGACACAGAGTGGCGGTCAGTCACCCTGCCTCGGGACCTGCAGTCCACCGGCAGGCAGTTCGACTCGTCCACCTTTGGAGGCCACAAAAGCGAGAAGCCGGCCCTGCCTCGAAAGCGGGCAAGCGAGAACAGGTCTGACCAGATGACCAGAGGCACGGTTACCCCGCCGCCCCGGCTGGTGAAGAAAACCGAGGAGGCCGCCGACGAGGTCTTTAAGGATGCGGCTGAGGCCAGCCCAGGCTCCAGCCCACCCAGCCTGACGCCAAAACCAATTCGGAGGCAGGGTGCGGCCGCACCTCCCTCCAGCCCTCCCCACAAGGAGGAGGCCGGCAGGCCCAGTGCCGCGGGGATGCCCGCTGAGCCGGCACCCCCCACCAGCCGGGCCGGGCTAGGAGCCTCCGGAGGACCCAGCAAGGCTGCCGCCACTGCTGCAGAGGAGCCCCGGGGGAGGAGGCACAAGCCCACCTCTGAGTCCCCAGGGAGAGACAGGGGGAAGCTGTCCAAGCTCAAACCCGCCCCGCCACCCCCGCCACCCACCTCCGCTGGCAAAGCCGGGAAGTCCTCGCAGAGCCCGAGCCAGGAAGCGGCCGGGGAGGCAGGCGCCGGGGCAAAGGTGAAACCTGCAGCTCTGGCTGCGGATGCCGTAAACAGCGACACCGCCAAGTCTGGCCAGCTGGGAGAGGGCGCCAAGAAGCCCGTGCTCCCATCCATGCCAAAGCCGCCGGCATCCACCAAGCCGGCGGGGACCCCGACCAGCCCCGCCCCCACCCCCGCCACCTTGCCGTCAGCACCCTCTGCCCTGGCAGGGGACCAGCCGTCCTCCACCGCCTTCATTCCACTCATATCGACCCGCGTGTCTCTTCGGAAAACCCGGCAGCCTCCTGAACGGATCGCCAGTGGCGCCATCACCAAGGGCATGGTGCTGGATGGCACGGAGGCCCTGTGCCTGGCCATCTCCAAGAACTCAGAGCAGATGGCCAGCCACAGCGCCGTGCTCGAAGCCGGCAAAAACCTCTACACATTCTGCGTGAGCTACGTGGACTCCATCCAGCAAATGAGGAACAAATTCGCCTTCCGCGAGGCCATCAACAAACTGGAGAACAACCTCCGGGAGCTGCAGATCTGCCCAGCAACAGCAGGTGGTGGCCCAGCGGCCACTCAGGACTTCAGCAAACTCCTCAGCTCCGTGAAGGAGATCAGCGACATCGTGCAGAGGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017976:ENSBTAT00000023920:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.798
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF089195=F_actin_bind=WD(100=19.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development