MmuEX0043380 @ mm9
Exon Skipping
Gene
ENSMUSG00000026904 | Slc4a10
Description
solute carrier family 4, sodium bicarbonate cotransporter-like, member 10 [Source:MGI Symbol;Acc:MGI:2150150]
Coordinates
chr2:62081419-62088593:+
Coord C1 exon
chr2:62081419-62081510
Coord A exon
chr2:62082409-62082498
Coord C2 exon
chr2:62088436-62088593
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCTGTTAATTATGCGTGCAGGGA
3' ss Score
5.48
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CAGGTCAGGTTGTTTCTCCTCAGTCTGCTCCAGCCTGTGCTGAGAATAAAAATGATGTCAGCAGGGAAAACAGCACTGTAGACTTCAGCAAG
Seq A exon
GGACTGGGAGGCCAACAAAAGGGGCATACTAGTCCATGTGGGATGAAACAAAGGCTTGACAAAGGACCTCCACACCAGCAGGAGAGAGAG
Seq C2 exon
GTTGATCTGCATTTTATGAAAAAGATTCCTCCGGGTGCTGAAGCTTCAAACATCTTGGTAGGAGAACTGGAGTTCCTAGACAGAACTGTGGTTGCCTTTGTCAGGTTGTCTCCAGCTGTCTTGCTCCAAGGACTTGCTGAAGTTCCAATCCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026904_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.806 A=1.000 C2=0.044
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(11.5=100)
A:
PF075658=Band_3_cyto=FE(10.0=100)
C2:
PF075658=Band_3_cyto=FE(20.0=100)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCAGGGAAAACAGCACTG
R:
GCAAGTCCTTGGAGCAAGACA
Band lengths:
172-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types