RnoEX0082783 @ rn6
Exon Skipping
Gene
ENSRNOG00000005307 | Slc4a10
Description
solute carrier family 4 member 10 [Source:RGD Symbol;Acc:631407]
Coordinates
chr3:48198903-48205031:+
Coord C1 exon
chr3:48198903-48198991
Coord A exon
chr3:48199895-48199984
Coord C2 exon
chr3:48204874-48205031
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCTGTTAATTATGCGTGCAGGGA
3' ss Score
5.48
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTCAGGTCGTTTCTCCTCAGTCTGCTCCAGCCTGTGCTGAAAATAAAAATGACGTCAGCAGGGAAAACAGCACCGTAGACTTCAGCAAG
Seq A exon
GGACTGGGAGGCCAGCAAAAAGGGCATACTAGTCCATGTGGGATGAAACAAAGGCTTGACAAAGGACCACCACACCAGCAGGAGAGAGAG
Seq C2 exon
GTTGATCTTCATTTTATGAAAAAGATTCCTCCGGGTGCTGAGGCTTCAAACATCTTGGTAGGAGAACTGGAGTTTCTAGACAGAACTGTGGTTGCTTTTGTCAGGTTGTCTCCAGCCGTCTTGCTCCAAGGACTGGCTGAAGTTCCAATCCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005307_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.984 A=1.000 C2=0.117
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(10.0=100)
A:
PF075658=Band_3_cyto=FE(10.0=100)
C2:
PF075658=Band_3_cyto=FE(18.0=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCACCGTAGACTTCAGC
R:
GGGATTGGAACTTCAGCCAGT
Band lengths:
176-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]