BtaEX0033324 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015317 | SLC4A10
Description
sodium-driven chloride bicarbonate exchanger [Source:RefSeq peptide;Acc:NP_001033217]
Coordinates
chr2:34697207-34706560:-
Coord C1 exon
chr2:34706469-34706560
Coord A exon
chr2:34705412-34705501
Coord C2 exon
chr2:34697207-34697364
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTTGTTACTTATGCGTGCAGGGG
3' ss Score
5.97
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CAGGCCAGGTTGTTTCTCCTCAGTCTGCACCAGCCTGTGTTGAAAATAAAAATGATGTGAGCAGGGAAAACAGCACAGTTGATTTCAGCAAG
Seq A exon
GGGCTGGGAGGCCAACAAAAGGGGCATACTAGCCCATGTGGGATGAAACAAAGACATGAGAAAGGACCTCCACACCAGCAAGACAGAGAG
Seq C2 exon
GTCGATCTGCATTTTATGAAGAAGATTCCTCCAGGTGCTGAAGCCTCCAACATCTTAGTTGGAGAATTAGAGTTTTTGGATCGAACTGTAGTTGCATTTGTCAGGCTGTCCCCAGCTGTACTGCTTCAAGGATTAGCTGAGGTCCCAATCCCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015317_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=1.000 C2=0.132
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(10.3=100)
A:
PF075658=Band_3_cyto=FE(10.0=100)
C2:
PF075658=Band_3_cyto=FE(17.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCAGGGAAAACAGCACA
R:
CCTTGAAGCAGTACAGCTGGG
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development