MmuEX0007222 @ mm9
Exon Skipping
Gene
ENSMUSG00000034780 | B3galt1
Description
UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1349403]
Coordinates
chr2:67715885-67911630:+
Coord C1 exon
chr2:67715885-67715949
Coord A exon
chr2:67819800-67819847
Coord C2 exon
chr2:67911506-67911630
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTCCATTGCCTTCTTTTCAGGAA
3' ss Score
9.73
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AATTCACTTGGAAAAGTCACGTGGAGCAACTCCAGCTAAAGAAGCATGAAGACTAGTCTACTGGG
Seq A exon
GAAAGAAGAAATGGGTTTCCACGGACCTATCAATGATACTCATCACAG
Seq C2 exon
GATTCTGCAATTTGGTGTGCATCAGCTTTTGGAGTGAGCCTCTCAAATCTCTACAGACCAATGGAGACTAAGCAAGATGCTCTGTAGCTGAACTAAGAAGAAAGGCAGCAAGTTTGGCCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034780_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAAAAGTCACGTGGAGCA
R:
TGCTTAGTCTCCATTGGTCTGT
Band lengths:
132-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: