MmuEX0038659 @ mm9
Exon Skipping
Gene
ENSMUSG00000038831 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:MGI Symbol;Acc:MGI:1922008]
Coordinates
chr2:32998820-33002173:-
Coord C1 exon
chr2:33002090-33002173
Coord A exon
chr2:33000918-33001023
Coord C2 exon
chr2:32998820-32998912
Length
106 bp
Sequences
Splice sites
3' ss Seq
AACTGAGAGTCTCCCTTTAGCCC
3' ss Score
-0.41
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
CAGGGGACGTCTTTATGCCACGCTGGGACCTAACTGGCGGGTTCCAGTTCGGAATTCTCCCAGAACTCGGAGCTGTGTCTACAG
Seq A exon
CCCCACGAGCCCTTGCACCTGTACTGTGGGAAGCTCAGCCACTGTGCCCACTATGGAGGGGCCTCTGAGACGGAAAACCCTGCTCAAGGAAGGCCGGAAGCCTGCA
Seq C2 exon
CTGTCCTCGTGGACCAGGTACTGGGTTGTACTCTCAGGAGCCACCCTCCTTTACTATGGAGCCAAGTCTTTGCGGGGTACAGACAGAAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038831_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.287 A=0.489 C2=0.096
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(17.0=52.8)
C2:
PF0016924=PH=FE(26.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGGACGTCTTTATGCCAC
R:
CTGTCTGTACCCCGCAAAGAC
Band lengths:
170-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types