DreEX0060659 @ danRer10
Exon Skipping
Gene
ENSDARG00000068370 | ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:ZFIN;Acc:ZDB-GENE-070720-16]
Coordinates
chr8:32914560-32921068:-
Coord C1 exon
chr8:32920988-32921068
Coord A exon
chr8:32916396-32916501
Coord C2 exon
chr8:32914560-32914652
Length
106 bp
Sequences
Splice sites
3' ss Seq
GATTGTGTTTTCCTCATCAGCAC
3' ss Score
6.53
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
AGGCCGAATGTATGCAACACTTGGCCCAAATTGGCGTGTCCCAATATGTAACTCTCCTAGAAGTAGAAGCTACATTTATAG
Seq A exon
CACCCCTGGGGCTGTATCCAGCTATGAATGCAGTACTCTCAGCAGTATAACCATTGAAGGGCCACTGCGGAGAAAGACACTAATGAAGGAGGGTAAAAAACCCACT
Seq C2 exon
CTGTCATCCTGGAAGCGCTATTGGATTGTCCTGTCTGGCTCCATTCTCATCTATTTTGGTTCCAAAGCTCTAAGAGCAAATGAACGAAGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068370-'16-19,'16-18,17-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(17.0=52.8)
C2:
PF0016924=PH=FE(26.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCGAATGTATGCAACACT
R:
TGTCTTCGTTCATTTGCTCTTAGA
Band lengths:
173-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]