HsaEX6063066 @ hg19
Exon Skipping
Gene
ENSG00000136828 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:16851]
Coordinates
chr9:129972974-129974998:+
Coord C1 exon
chr9:129972974-129973057
Coord A exon
chr9:129974410-129974515
Coord C2 exon
chr9:129974906-129974998
Length
106 bp
Sequences
Splice sites
3' ss Seq
GACTGGTAGTCTCTCCTCAGCCC
3' ss Score
1.47
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
CAGGGGACGTCTCTATGCCACCCTGGGGCCCAACTGGCGGGTTCCAGTTAGGAATTCTCCCAGAACCCGGAGCTGTGTCTACAG
Seq A exon
CCCCACCGGCCCGTGCATCTGTTCTCTGGGGAACTCCGCAGCTGTGCCCACCATGGAGGGGCCTCTGAGAAGAAAAACCCTGCTCAAGGAAGGGCGGAAGCCTGCG
Seq C2 exon
CTGTCCTCGTGGACCAGGTACTGGGTCATACTCTCAGGATCCACCCTCCTGTACTACGGAGCCAAGTCCTTGCGGGGCACAGACAGAAAACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136828-'32-30,'32-29,33-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=0.287 C2=0.070
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(17.0=52.8)
C2:
PF0016924=PH=FE(26.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGGACGTCTCTATGCCA
R:
GTGTTTTCTGTCTGTGCCCCG
Band lengths:
177-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)