BtaEX6046185 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023843 | RALGPS1
Description
Bos taurus Ral GEF with PH domain and SH3 binding motif 1 (RALGPS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001193100]
Coordinates
chr11:97954519-97970036:+
Coord C1 exon
chr11:97954519-97954570
Coord A exon
chr11:97968051-97968156
Coord C2 exon
chr11:97969944-97970036
Length
106 bp
Sequences
Splice sites
3' ss Seq
GTTCTCCCCCCACTGCCCAGCCC
3' ss Score
4.93
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GCAGTAGTGAGAGCTCAGAGTTTAGTGAAGAGATGTCTTCAGGGCTGGAAAG
Seq A exon
CCCCACCGGTCCATGTATCTGTACACTGGGGAGCTCTGCGGCGACCCCCACCATGGAGGGGCCTCTGAGAAGGAAAACTCTGCTCAAGGAGGGACGGAAGCCCGCG
Seq C2 exon
CTGTCTTCATGGACCAGGTACTGGGTCATACTCTCAGGATCCACCCTCCTGTACTACGGAGCCAAGTCCTTGCGGGGCACAGACAGAAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023843-'29-42,'29-39,32-42=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=0.444 C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(17.0=52.8)
C2:
PF0016924=PH=FE(26.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTAGTGAGAGCTCAGAGT
R:
ATGTTTTCTGTCTGTGCCCCG
Band lengths:
145-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]