RnoEX0073777 @ rn6
Exon Skipping
Gene
ENSRNOG00000016910 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:RGD Symbol;Acc:2319500]
Coordinates
chr3:12188674-12191806:-
Coord C1 exon
chr3:12191723-12191806
Coord A exon
chr3:12190594-12190699
Coord C2 exon
chr3:12188674-12188766
Length
106 bp
Sequences
Splice sites
3' ss Seq
AACTGAGAGTCTCCCTTCAGCCC
3' ss Score
-0.03
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
CAGGGGACGTCTTTATGCCACGCTGGGGCCTAACTGGCGGGTTCCAGTTCGGAATTCTCCCAGAACTCGGAGCTGTGTCTACAG
Seq A exon
CCCCACGAGCCCTTGCACCTGTACTGTGGGAAGCTCAGCCACTGTGCCCACTATGGAGGGGCCTCTGAGACGGAAAACCCTGCTCAAGGAAGGCCGGAAGCCTGCA
Seq C2 exon
CTGCCCTCGTGGACCAGGTACTGGGTTGTACTCTCAGGATCCACCCTCCTTTACTATGGAGCCAAGTCCTTGCGGGGCACAGACAGAAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016910_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.528 C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(17.0=52.8)
C2:
PF0016924=PH=FE(26.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGGACGTCTTTATGCCAC
R:
ATGTTTTCTGTCTGTGCCCCG
Band lengths:
177-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]