GgaEX6015667 @ galGal4
Exon Skipping
Gene
ENSGALG00000000906 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:HGNC:16851]
Coordinates
chr17:10356376-10357682:+
Coord C1 exon
chr17:10356376-10356456
Coord A exon
chr17:10356716-10356821
Coord C2 exon
chr17:10357590-10357682
Length
106 bp
Sequences
Splice sites
3' ss Seq
GTAATGTTTTGATTCTGTAGCCC
3' ss Score
6
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGGTCGTTTGTATGCCACGCTGGGGCCAAATTGGAGGGTACCAATCCGGAATTCTCCCAGGAGTCGAAGCTGTGTCTACAG
Seq A exon
CCCAACAGGAGCCTGCAGCTGCACACTAGGTAGTTCCATGGGAGTAGTTACCATGGAAGGACCCTTAAGAAGAAAAACATTGCTCAAAGAAGGCAAGAAACCTACT
Seq C2 exon
CTCTCTTCATGGACTAGATACTGGATTATGCTTTCAGGATCGAATCTTCTGTATTTTGGAGCAAAATCTTTAAGAGGCAATGAAAGAAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906-'24-36,'24-34,25-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.125 C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(17.0=52.8)
C2:
PF0016924=PH=FE(26.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTTTGTATGCCACGCTGG
R:
TGTTTTCTTTCATTGCCTCTTAAAGA
Band lengths:
170-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]