HsaEX6035140 @ hg19
Exon Skipping
Gene
ENSG00000116191 | RALGPS2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:HGNC Symbol;Acc:30279]
Coordinates
chr1:178858777-178866891:+
Coord C1 exon
chr1:178858777-178858831
Coord A exon
chr1:178863054-178863159
Coord C2 exon
chr1:178866799-178866891
Length
106 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTTCGTTATTATAGTTC
3' ss Score
7.22
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
GTAGCAGCGATGGTTCTGAACTAAGTGAAGAGACCTCATGGCCTGCTTTTGAAAG
Seq A exon
TTCTGCAGAATCAGAAGATTTGGCAGTACATTTATATCCAGGAGCTGTTACTATTCAAGGTGTTCTCAGGAGAAAAACTTTGTTAAAAGAAGGCAAAAAGCCTACA
Seq C2 exon
GTAGCATCTTGGACAAAATATTGGGCAGCTTTGTGTGGGACACAGCTTTTTTACTATGCTGCCAAATCTCTAAAGGCTACCGAAAGAAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116191-'21-26,'21-25,24-26=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.484 A=0.012 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
PF154131=PH_11=PU(24.3=47.2)
C2:
PF154131=PH_11=FE(44.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGCAGCGATGGTTCTGAACT
R:
TGTTTTCTTTCGGTAGCCTTTAGAGA
Band lengths:
147-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)