MmuEX6028497 @ mm10
Exon Skipping
Gene
ENSMUSG00000026594 | Ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:MGI Symbol;Acc:MGI:1925505]
Coordinates
chr1:156817741-156821464:-
Coord C1 exon
chr1:156821387-156821464
Coord A exon
chr1:156819813-156819918
Coord C2 exon
chr1:156817741-156817833
Length
106 bp
Sequences
Splice sites
3' ss Seq
GCTTCGTCTCATTGTTACAGCTC
3' ss Score
8.53
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GAACAGATTATACCATTCTCTCGGCCCGGTGACAAGAGTGCCGCGAAATGGCTATCGAAGCCACACGAAGGCCAGCAG
Seq A exon
CTCTGCGGAGTCGGAAGATTTGGCGGTGCATCTGTACCCCGGAGCTGTTACTATTCAAGGTGTGCTCCGGAGGAAAACCTTGCTAAAAGAAGGCAAGAAACCCACA
Seq C2 exon
GTAGCATCTTGGACAAAGTATTGGGCAGCCTTGTGTGGAACACAGCTTTTTTACTATGCCGCCAAATCTCTGAAGGCTACAGAAAGAAAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026594-'41-48,'41-44,45-48=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=0.073 C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(17.0=52.8)
C2:
PF0016924=PH=FE(26.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGATTATACCATTCTCTCGGCC
R:
ATGCTTTCTTTCTGTAGCCTTCAGA
Band lengths:
170-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types