DreEX0060680 @ danRer10
Exon Skipping
Gene
ENSDARG00000026519 | ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1212]
Coordinates
chr20:16047600-16065606:-
Coord C1 exon
chr20:16065529-16065606
Coord A exon
chr20:16053439-16053544
Coord C2 exon
chr20:16047600-16047692
Length
106 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTTGTGTCTGTAGCTC
3' ss Score
9.17
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
GACTCGATTCTACCACTCTCTGGGTCCCGTCACCAGAGTGGGCCGCATGTCCTGCAGAGGATCGCTCAGGCCCAGCAG
Seq A exon
CTCTGCAGAGTCGGAGGAGCTGGCGGTTCATCTGTACCCAGGAGCCGTCACCGTTCAGGGCGTCTTACGCAGAAAAACAGTCCTAAAGGAGGGCAAGAAACCCACG
Seq C2 exon
GTGGCAGCCTGGACTAAGTATTGGGTGGCTCTTTGTGGTACTCAGCTTTATTATTATACTGCCAAGTCCCTCAAGGCCACAGAGAGAAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026519_MULTIEX1-5/7=4-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(17.0=52.8)
C2:
PF0016924=PH=FE(26.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCGATTCTACCACTCTCTGGG
R:
ATGTTTTCTCTCTGTGGCCTTGA
Band lengths:
170-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]