GgaEX6043813 @ galGal3
Exon Skipping
Gene
ENSGALG00000004273 | RGPS1_CHICK
Description
NA
Coordinates
chr8:6617599-6619944:-
Coord C1 exon
chr8:6619867-6619944
Coord A exon
chr8:6618202-6618307
Coord C2 exon
chr8:6617599-6617691
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTTTCACATGCTCCTTTCAGCTC
3' ss Score
8.4
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
GAACAGGTTGTACCATTCTCTCGGTCCGGGGACAAGAGTGTCACGAAATGGCTATCGAGGCCACATGAAGGCCAGCAG
Seq A exon
CTCTCTAGAATCTGAAGATTTGGCCGTTCATTTGTATCCAGGAGCAGTTACTATTCAAGGCGTTCTCAGAAGGAAGACTTTGTTGAAAGAAGGCAAAAAACCCACA
Seq C2 exon
GTAGCATCTTGGACAAAATACTGGGTAGCATTGTGTGGAACCCAACTCTTTTACTATGCTGCAAAATCTCTGAAGGCCACAGAGAGAAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004273-'25-30,'25-28,26-30=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(17.0=52.8)
C2:
PF0016924=PH=FE(26.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGGTTGTACCATTCTCTCGG
R:
TGTTTTCTCTCTGTGGCCTTCA
Band lengths:
170-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]