RnoEX6044897 @ rn6
Exon Skipping
Gene
ENSRNOG00000004736 | Ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:RGD Symbol;Acc:1311537]
Coordinates
chr13:74433733-74437551:-
Coord C1 exon
chr13:74437474-74437551
Coord A exon
chr13:74435998-74436103
Coord C2 exon
chr13:74433733-74433825
Length
106 bp
Sequences
Splice sites
3' ss Seq
TGTTGGTCTCGTTGTTACAGTTC
3' ss Score
8.57
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
GAACAGATTATACCATTCTCTCGGCCCGGTGACAAGAATGCCACGAAATGGCTATCGAAGCCACATGAAGGCCAGCAG
Seq A exon
TTCTGCAGAGTCGGAAGACTTGGCGGTGCACCTGTACCCAGGGGCTGTTACTATTCAAGGCGTTCTCAGGAGGAAAACTTTGTTAAAAGAAGGCAAAAAACCCACA
Seq C2 exon
GTAGCATCTTGGACAAAGTATTGGGCAGCCTTGTGTGGAACACAGCTTTTTTACTATCCTGCCAAATCTCTGAAGGCTACAGAAAGAAAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004736-'37-32,'37-31,38-32=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=0.028 C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(17.0=52.8)
C2:
PF0016924=PH=FE(26.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGATTATACCATTCTCTCGGCC
R:
GTGCTTTCTTTCTGTAGCCTTCA
Band lengths:
170-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]