BtaEX6069996 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010718 | RALGPS2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:HGNC Symbol;Acc:HGNC:30279]
Coordinates
chr16:61704317-61706673:+
Coord C1 exon
chr16:61704317-61704394
Coord A exon
chr16:61705941-61706046
Coord C2 exon
chr16:61706581-61706673
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTCACTTTTATAGTTC
3' ss Score
10.03
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
GAACAGATTATACCATTCTCTCGGCCCGGTGACAAGAGTGGCACGAAATGGCTATCGAAGCCACATGAAGGCCAGCAG
Seq A exon
TTCTGCAGAATCAGAGGATTTGGCAGTACATTTATATCCAGGGGCTGTTACTATTCAAGGTGTTCTCAGGAGAAAAACTTTGTTAAAAGAAGGCAAGAAGCCAACA
Seq C2 exon
GTAGCATCTTGGACAAAATATTGGGCAGCTTTGTGTGGGACGCAGCTTTTCTACTATGCTGCCAAATCTCTAAAGGCTACAGAAAGAAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010718-'34-30,'34-29,35-30=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(17.0=52.8)
C2:
PF0016924=PH=FE(26.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGATTATACCATTCTCTCGGCC
R:
TGTTTTCTTTCTGTAGCCTTTAGAGA
Band lengths:
170-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]