DreEX6009077 @ danRer10
Exon Skipping
Gene
ENSDARG00000102152 | FO834898.1
Description
NA
Coordinates
chr5:4255538-4264984:-
Coord C1 exon
chr5:4264904-4264984
Coord A exon
chr5:4256192-4256288
Coord C2 exon
chr5:4255538-4255630
Length
97 bp
Sequences
Splice sites
3' ss Seq
ATGAGATGTCCTCTGTTCAGTCC
3' ss Score
4.68
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGGCCGCATGTACGCCACTCTGGGCCCCAACTGGAGGGCTCCTGTACGCAATTCCCCCAGAGGCCGCGGCCGGGCCCTCAG
Seq A exon
TCCGTCAGTTACGGAGGTCACTGGAGACGCCAGTTTGTTCACGATGCAGGGGGCAATCAGGAGGAAAACCATGATGAAGGAGGGCAGGAAACCCAAG
Seq C2 exon
CTCTCATCATGGACACGGTACTGGATCACACTGTCTGGATCCACTCTCTTATTCTACAGATCCAAAGCCCTGCGAGCCACAAACCGCAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102152-'6-7,'6-6,7-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(17.0=57.6)
C2:
PF0016924=PH=FE(26.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATGTACGCCACTCTGG
R:
ATGTTTGCGGTTTGTGGCTCG
Band lengths:
170-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]