MmuALTD0010299-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000027088 | Phospho2
Description
phosphatase, orphan 2 [Source:MGI Symbol;Acc:MGI:1920623]
Coordinates
chr2:69627861-69628378:+
Coord C1 exon
chr2:69627861-69627961
Coord A exon
chr2:69627962-69628013
Coord C2 exon
chr2:69628343-69628378
Length
52 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTTT
5' ss Score
2.06
3' ss Seq
GTTGTGCTATCTCTCCTCAGGTT
3' ss Score
10.89
Exon sequences
Seq C1 exon
CTGCCGCTTTTCTCACTCGCTGCGCTAGTTTGGAACCGGCCGGTGTGCGAGTCGAGGCCCAGGCTGGGTGCGAGCTTCTACTCTGCGCCCCGCTGGCTGAG
Seq A exon
GTGAAGGACAGCCCTTTGACCACCGAGCCACAAGGATTAAAGGACAGAAAAG
Seq C2 exon
GTTTTCTATCAGAGATGTTCCACTGTAATAATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027088-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCTTTTCTCACTCGCT
R:
GCATTATTACAGTGGAACATCTCTGA
Band lengths:
133-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: