MmuINT0146121 @ mm9
Intron Retention
Gene
ENSMUSG00000036067 | Slc2a6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:MGI Symbol;Acc:MGI:2443286]
Coordinates
chr2:26879055-26879855:-
Coord C1 exon
chr2:26879703-26879855
Coord A exon
chr2:26879164-26879702
Coord C2 exon
chr2:26879055-26879163
Length
539 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
CCAGTGCCCTGCCCCCACAGCCC
3' ss Score
8.64
Exon sequences
Seq C1 exon
AGTAGCCGAGTGTCGTGGGCGGAAGCCCGGGAACCCCGTGTGTACCGGCCTGTTCTCATTGCAGTACTGATGCGCTTTCTGCAGCAGCTGACAGGCATCACACCCATCCTGGTGTACCTACAGACCATCTTCGACAACACATCCGTGGTGCTG
Seq A exon
GTGAGAACCCACTCGGCCAGCACTGCCCAGAGCCCTGACAGGCAGGGCAGCCAGGAAGTTAGTGGCTGAGACCTGGATGCCTCTCATTCACAACCTGTCTCAATACATTCTTCTCAAGCGAAGCTTAAGTGCTTTAAAATATGCAGAAGAACAGAAGAAAACAATGTAATAGGATATATAACTCTTGGGACAGTGGCCCCCAGGCTCAGATCCCAGGAGGGACTAGAAGGTCCCTGGAGCCCAGTTCCACCCCAGGTTCTTCCTGCTATGAGGTGTAAAGATAAGGGTGACTCAAGTCGACCACTGCTGTCCAACCAGGGGCTGTGCCCACTATGGCTAGTAGCAGGCACAGCAGACATGCCCCTGCTGGGGCACAGAAGAAGTACCTAGGGCTCGATAGCTAGGATAGCTCATGGCCCCCCAAAAAGGGAGGGGGCAGTGACCCTGGACTTAGGGCTGAACGTCCTTAGTGCATTAGGGTCAGGGTAGGGCACGGGACACTAGGCCAGGTCTCTCAGCCCAGTGCCCTGCCCCCACAG
Seq C2 exon
CCCTCCCAGCAGGATGCAGCGATAGTTGGTGCTGTGAGGCTCCTATCTGTGCTGATTGCTGCTGTCACCATGGACCTGGCGGGCCGAAAAGTTCTGCTCTATGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036067-Slc2a6:NM_172659:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(11.1=100)
A:
NA
C2:
PF0008319=Sugar_tr=PD(10.9=89.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAGCCGAGTGTCGTGGG
R:
CTGACACATAGAGCAGAACTTTTCG
Band lengths:
262-801
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: