HsaINT0152348 @ hg38
Intron Retention
Gene
ENSG00000160326 | SLC2A6
Description
solute carrier family 2 member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
Coordinates
chr9:133473980-133475113:-
Coord C1 exon
chr9:133474961-133475113
Coord A exon
chr9:133474089-133474960
Coord C2 exon
chr9:133473980-133474088
Length
872 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TGGTGGTCTCCCCCCGATAGCCC
3' ss Score
6.75
Exon sequences
Seq C1 exon
AGCAGCCGAGTATCGTGGGCTGAGGCACGGGCCCCACACGTGTGCCGGCCCATCACCGTGGCCTTGCTGATGCGCCTCCTGCAGCAGCTGACGGGCATCACGCCCATCCTGGTCTACCTGCAGTCCATCTTCGACAGCACCGCTGTCCTGCTG
Seq A exon
GTGAGAGCCCAGCCCCGGCCGGCGCCCACCCACGGGGTCCCCTGGAGGCTGGCAGGGCAGGGGAGGCAGGGCCTGCTCCTGCACTTACCCAACCCCTGGTCTTACCCACACCTGCTCTGTGCCAGGTGTCAGGGATGCCACAGCAAGATCTGAGATCTGGGCCTTGTGGAGACAGTTCCAGTGCCTTCACCTGTTCTCAGAATGTTTTTAAGATAAGCTTAAGTGTTTTAAAATAAAATACTGGCAAAATCCCAACACGAGGCCAAGGCGGGAGGATCACTTAAGCCCAGGAGTGTGAGACTGCAGTGGCCACGATCTCACCACTGCACTCCATCCTGGTGACAGAGCAGGACCCTGTCTCTAAAAACATATAGAAATTTTAAAAATTAAATAAAATACATGGGATTACAAAGGAAACCAGCTTTATAGAAACGTGGACCCCTTGAGGCCACAGACCCCAGGTTCAGAGCCCTGTGGCATCTGCCACTTAATGAGGGAAGTCACTTTCCCCTCTGAACCTCAACTTCCTCCTCTGCAAGATGAAGATAGCAGCACATCTCCATCAGCCTGCCCCAAGGCTCAAAGTGAGATGAGATTTGAAGATTAGTAACAGCACGGTTCAGCAAGTCATCATCACGCCTGGATTCTGTGCCAGCTGGGCATAGTGGTGGGCAGAGCAGATGTGTCCCTGCCCAGGAGCCCCATAGGCTCGGACAGTATAGATGCCCAGCACGCTGCAGGTGCCAGGCCACTCAGTACTGCACTGAGCTGCTGGCCTGAGCCCCTGCAATGCCTGCCGGGACAAGCTGGGTCCTGGAGGGGGATGGGAACAGCAGGCAGGTCCCTCAGCCCTGGTGGTCTCCCCCCGATAG
Seq C2 exon
CCCCCCAAGGACGACGCAGCCATCGTTGGGGCCGTGCGGCTCCTGTCCGTGCTGATCGCCGCCCTCACCATGGACCTCGCAGGCCGCAAGGTGCTGCTCTTCGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160326:ENST00000371899:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(16.3=100)
A:
NA
C2:
PF0008319=Sugar_tr=PD(11.4=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCCGAGTATCGTGGG
R:
CTGAGACGAAGAGCAGCACCT
Band lengths:
262-1134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains