MmuEX0000755 @ mm9
Exon Skipping
Gene
ENSMUSG00000026955 | 2010317E24Rik
Description
RIKEN cDNA 2010317E24 gene [Source:MGI Symbol;Acc:MGI:1919330]
Coordinates
chr2:25231205-25231794:+
Coord C1 exon
chr2:25231205-25231351
Coord A exon
chr2:25231488-25231595
Coord C2 exon
chr2:25231684-25231794
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGGTCCCGCTTCTTTTCCAGGAC
3' ss Score
10.72
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
TTGAAGCAGATGAAGGAGTTAGACCAGGAACAGGAGGTGCTTCTGCAGGGCCTGGAGATGATGGCACGGGGCCGAGACTGGTACCAGCAGCAGCTGCAGCGTGTGCAGGAACGTCAGCGCCGCCTGAGCCAGAGCAGAGCTGCTGCA
Seq A exon
GACTTTGGGGCTGAAGGAAGCCCCCGCCCTCTGGGGAGGTTGCTGCCCAAAGTACAGGAGGTGGCCCGGTGCCTGGGGGAGCTGTTGACTGCAGCCTGCTCTGGCAGA
Seq C2 exon
GCTCTGCCTTCGTCCTCTTTAGGGCCCCTGGGCCCTCCCTCACCCTCAACTCCAGTCTGGCAGCAACAGACCATCCTCATGCTGAAAGAACAGAACCGGCTTCTCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026955-'4-9,'4-8,5-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.367 A=0.399 C2=0.595
Domain overlap (PFAM):
C1:
PF114143=Suppressor_APC=FE(57.1=100)
A:
PF114143=Suppressor_APC=PD(34.5=80.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTAGACCAGGAACAGGAGGT
R:
CTGAGTGAGAAGCCGGTTCTG
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: