HsaEX6064190 @ hg19
Exon Skipping
Gene
ENSG00000186193 | C9orf140
Description
suppressor APC domain containing 2 [Source:HGNC Symbol;Acc:28055]
Coordinates
chr9:139959315-139960120:-
Coord C1 exon
chr9:139959974-139960120
Coord A exon
chr9:139959530-139959637
Coord C2 exon
chr9:139959315-139959431
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTCCTCTGCTTTCTTCCCAGGAC
3' ss Score
10.58
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
CTGAAGCAGATGAAGGAGCTGGAGCAGGAGAAGGAGGTGCTGCTGCAGGGTTTGGAGATGATGGCGCGGGGCCGCGACTGGTACCAGCAGCAGCTGCAACGAGTGCAGGAGCGCCAGCGCCGCCTGGGCCAGAGCAGAGCCAGCGCC
Seq A exon
GACTTTGGGGCTGCAGGGAGCCCCCGCCCACTGGGGCGGCTACTGCCCAAGGTACAAGAGGTGGCCCGGTGCCTGGGGGAGCTGCTGGCTGCAGCCTGTGCCAGCCGG
Seq C2 exon
GCCCTGCCCCCGTCCTCCTCCGGGCCCCCCTGCCCTGCCCTGACGTCCACCTCACCCCCGGTCTGGCAGCAGCAGACCATCCTCATGCTGAAGGAGCAGAACCGACTCCTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186193-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.497 A=0.306 C2=0.513
Domain overlap (PFAM):
C1:
PF114143=Suppressor_APC=FE(57.1=100),PF097894=DUF2353=PU(29.1=93.9)
A:
PF114143=Suppressor_APC=PD(34.5=80.6),PF097894=DUF2353=FE(22.2=100)
C2:
PF097894=DUF2353=FE(24.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAGCTGGAGCAGGAGAA
R:
AGGAGTCGGTTCTGCTCCTTC
Band lengths:
246-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)