HsaEX6064190 @ hg38
Exon Skipping
Gene
ENSG00000186193 | SAPCD2
Description
suppressor APC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28055]
Coordinates
chr9:137064863-137065668:-
Coord C1 exon
chr9:137065522-137065668
Coord A exon
chr9:137065078-137065185
Coord C2 exon
chr9:137064863-137064979
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTCCTCTGCTTTCTTCCCAGGAC
3' ss Score
10.58
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
CTGAAGCAGATGAAGGAGCTGGAGCAGGAGAAGGAGGTGCTGCTGCAGGGTTTGGAGATGATGGCGCGGGGCCGCGACTGGTACCAGCAGCAGCTGCAACGAGTGCAGGAGCGCCAGCGCCGCCTGGGCCAGAGCAGAGCCAGCGCC
Seq A exon
GACTTTGGGGCTGCAGGGAGCCCCCGCCCACTGGGGCGGCTACTGCCCAAGGTACAAGAGGTGGCCCGGTGCCTGGGGGAGCTGCTGGCTGCAGCCTGTGCCAGCCGG
Seq C2 exon
GCCCTGCCCCCGTCCTCCTCCGGGCCCCCCTGCCCTGCCCTGACGTCCACCTCACCCCCGGTCTGGCAGCAGCAGACCATCCTCATGCTGAAGGAGCAGAACCGACTCCTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186193-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.306 C2=0.513
Domain overlap (PFAM):
C1:
PF114143=Suppressor_APC=FE(57.1=100)
A:
PF114143=Suppressor_APC=PD(34.5=80.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAGCTGGAGCAGGAGAA
R:
AGGAGTCGGTTCTGCTCCTTC
Band lengths:
246-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains