RnoEX0077988 @ rn6
Exon Skipping
Gene
ENSRNOG00000013069 | Sapcd2
Description
suppressor APC domain containing 2 [Source:RGD Symbol;Acc:1590629]
Coordinates
chr3:2595484-2596071:+
Coord C1 exon
chr3:2595484-2595630
Coord A exon
chr3:2595775-2595882
Coord C2 exon
chr3:2595973-2596071
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATTCCCTGCTTCTCTTCCAGGAC
3' ss Score
12.4
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
TTGAAGCAAATGAAGGAATTAGACCAGGAACAGGAGGTGCTGCTGCAGGGTCTGGAGATGATAGCCCGGGGCCGAGAGTGGTACCAGCAGCAGCTGCAACGTGTACAGGAACGTCAGCGCCGCCTGAGCCAGAGCAGAGCTGCCGCC
Seq A exon
GACCTTGGGGCTGAAGGGAGCCCCCGCCCTCTGGGGAGGCTGCTGCCCAAAGTACAGGAGGTAGCCCGGTGCCTGGGGGAGCTGTTGACAGCAGCCTGTTCTGGCAGA
Seq C2 exon
GTTCCACCCTCGTCCTCCCCCTCAACCTCCCCCTCAACTCCAGTCTGGCAGCAGCAGACCATCCTCATGCTGAAAGAACAGAACCGGCTTCTCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013069-'5-5,'5-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.408 A=0.444 C2=0.606
Domain overlap (PFAM):
C1:
PF114143=Suppressor_APC=FE(57.1=100)
A:
PF114143=Suppressor_APC=PD(34.5=80.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAATGAAGGAATTAGACCAGGA
R:
CTGAGTGAGAAGCCGGTTCTG
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]