GgaEX6014645 @ galGal4
Exon Skipping
Gene
ENSGALG00000009060 | SAPCD2
Description
suppressor APC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28055]
Coordinates
chr17:386664-388364:+
Coord C1 exon
chr17:386664-386810
Coord A exon
chr17:387583-387684
Coord C2 exon
chr17:388242-388364
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCTTTCACCCCATCTTCCAGGAC
3' ss Score
9.91
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTGAAGCATATGAAGGAGCTGGAACAGGAGAAGGATTTCCTGCTTCAGGGTCTGGAGATGGTTGAGCGTGCCCGTGAGTGGTACCACCAGCACATCCACTTCATGCAAGAACGCCAGAGGCTCTTGGGGAAAAACAAAACCAGCACT
Seq A exon
GACTTCCTCCCTGATGGCAGCCAGAGCCACCTGGGGCACCTGATCCCGAAGCTGCAGGAGGTGAACCGCTGCCTGGGTGAGCTCCTGTCAGCTGTAGGCAAG
Seq C2 exon
CCAGGGAACCCCACCTCAGCACTGAGCAGGCTGGCCCCCACTGCCCCTGCGGCATCCCCGGCCTCAGCAGGCACCCAGCAGGCCATCAACATGCTGAAGGAGCAAAACCGGCTTCTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009060-'8-8,'8-7,10-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=0.441 C2=0.951
Domain overlap (PFAM):
C1:
PF114143=Suppressor_APC=FE(57.1=100)
A:
PF114143=Suppressor_APC=PD(34.5=85.3)
C2:
PF041087=APG17=PU(38.6=65.9),PF0497710=DivIC=PU(34.8=56.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATATGAAGGAGCTGGAACA
R:
CCTTCAGCATGTTGATGGCCT
Band lengths:
243-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]