GgaEX6014645 @ galGal3
Exon Skipping
Gene
ENSGALG00000009060 | C9orf140
Description
NA
Coordinates
chr17:768403-770696:+
Coord C1 exon
chr17:768403-768549
Coord A exon
chr17:769217-769318
Coord C2 exon
chr17:770574-770696
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCTTTCACCCCATCTTCCAGGAC
3' ss Score
9.91
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTGAAGCATATGAAGGAGCTGGAACAGGAGAAGGATTTCCTGCTTCAGGGTCTGGAGATGGTTGAGCGTGCCCGTGAGTGGTACCACCAGCACATCCACTTCATGCAAGAACGCCAGAGGCTCTTGGGGAAAAACAAAACCAGCACT
Seq A exon
GACTTCCTCCCTGATGGCAGCCAGAGCCACCTGGGGCACCTGATCCCGAAGCTGCAGGAGGTGAACCGCTGCCTGGGTGAGCTCCTGTCAGCTGTAGGCAAG
Seq C2 exon
CCAGGGAACCCCACCTCAGCACTGAGCAGGCTGGCCCCCACTGCCCCTGCGGCATCCCCGGCCTCAGCAGGCACCCAGCAGGCCATCAACATGCTGAAGGAGCAAAACCGGCTTCTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009060-'8-10,'8-9,9-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=0.412 C2=0.951
Domain overlap (PFAM):
C1:
PF114143=Suppressor_APC=FE(57.1=100)
A:
PF114143=Suppressor_APC=PD(34.5=85.3)
C2:
PF041087=APG17=PU(38.6=65.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATATGAAGGAGCTGGAACA
R:
CCTTCAGCATGTTGATGGCCT
Band lengths:
243-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]