BtaEX6047584 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047807 | SAPCD2
Description
suppressor APC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28055]
Coordinates
chr11:106171997-106172693:+
Coord C1 exon
chr11:106171997-106172143
Coord A exon
chr11:106172390-106172497
Coord C2 exon
chr11:106172583-106172693
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCCTCCGTGCTCTCCTCCAGGAC
3' ss Score
12.06
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CTGAAGCAGATGAGGGAGCTGCAGCAGGAGCAGGAAGTGCTGCTGCAGGGTCTGGAGATGATGGCACGGGGCCGGGAGTGGTACCAGCAGCAGCTGCAGCGCCTGCAGGAGCGCCAGCACCGCCTGGGCCAGAGCAGGGCCAGCTCG
Seq A exon
GACCTCGGGGCTGAGGGCAGCCCCCGCCTGCTGGGGCAGCTGCTGCCCAAGGTGCAGGAGGTGGCCCGGTGCCTGGGGGAGCTTCTGGCTGCGGCCTGTGCTACCAGG
Seq C2 exon
GCTCTGCCCTCGTCCTCCTCGGGGCCCCCTGGCCCTGTGTCACCCTCGGCCCCCAACTGGCAGCAGCAGACCATCCTCATGCTGAAGGAGCAGAACCGGCTCCTGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047807-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.490 A=0.222 C2=0.676
Domain overlap (PFAM):
C1:
PF114143=Suppressor_APC=FE(57.1=100)
A:
PF114143=Suppressor_APC=PD(34.5=80.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGCAGATGAGGGAGCTG
R:
AGCCGGTTCTGCTCCTTCAG
Band lengths:
248-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]