MmuINT0131367 @ mm9
Intron Retention
Gene
ENSMUSG00000038831 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:MGI Symbol;Acc:MGI:1922008]
Coordinates
chr2:32992493-32996606:-
Coord C1 exon
chr2:32996515-32996606
Coord A exon
chr2:32993230-32996514
Coord C2 exon
chr2:32992493-32993229
Length
3285 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
GGGTGAGCTTTCTCTTCTAGGTA
3' ss Score
8.33
Exon sequences
Seq C1 exon
GCAATGTTTACAAGTTCCAGACGGGCTCCCGTTTCCATGCGATACTGTGGCACAAGCATTTGGATGATGCATGTAAAAGCAGCAGGCCTCAG
Seq A exon
GTAACATCCCTCAGATCTGTGTCAGCAGAATCCTGTAGACAGCAGGTCTCCCATCTGCCCTCAGAGTTCACCAGGTTTGTTCCTAGGTGCCCACTCAAAGGTTTTCCCATGAGTCAAGGCAACCCTTGCATGAATGAAGCCTGGCCTAAACTAGAATGTAATAACCTTTCCACTAGAGAAAATGCAACAGATATAGCCATTAGGGGACAGTGAGGTGGCAAGTGTGACATCATCCAGTGTCCAGCTCTAGCATCTATTTAGTCTGTTCCCCAGAGCTGATTTCATTGGAAAAATGCAAATTGACCAATAGGTCTGTCCCTCTGCCTGGGGAGTGTCCTAGTAATATCTCAAGTATTTAGGGGCAACCATGTGCCAGGCAAGGCACAGAACCTAGGTCCTGGTCTAGCCTCTTCCTCTGCTGTTCCCACTCCTCTCCTTGACACCCATGACTTTACATGCAGCCATGTCCCTATGATGTGGGTTCTCTTACTGTCTCCATTGTACTCTGAGGAGCCTAAGGCTCAGAAGTGAAGGACACCTGTGCAAGGGCCCATTGTGAGTGAGTGGTGGAGCTGGGACCCAACTCCATCCACCTGATCCACAACTCTGACCTCATAGCTCCTGACTGAGAGTCCCTGTCATTGTACCAGACAGAGAGAGCCAGGAGTACAGCCCCTACTGGGCAGACCTGTGAAGGAATGGCAGCCTCCATCCTTAACACAGGTGGGGTTGAGTTGGAACATCTTGCTCCCTGCATGTCACGTGGGCAGTATTGATGCCACAAGGAAGCCCAAAGTAAACTACCCTGTCCTCAGGACCTGTGGGCCCGCGGGTGTGCTCACCCTGTCCTCACCATGTCCTTACAACCAAATGTGAAAGCATGCTCATCATGGCACTGTCCATGATAGAACACCAGAAACCTCCAGCCTGCCTGAGATTCCTGAGCAACACCAGATAGCTACCAGAAATATGGTGGCAGGTCTAAGGAGGTCTAAAAGGCGTTGGGGTAGGCAAGGATGACTGCATTTGCTTTTAAATGTTTGTGAATATTTACTATATGTATGTGAGCATAGTCATGTAAAATCTCTACAGTGATATACAAGAAACTATAATCCTATAATTTTAGAGTGCTTATTTACCTGTGAGATAGACGAGCAGATAGATGCACGAAGTCTTTTTCAGTGGTGCTGAGGTTGAGCCCTGGGCCTCAGACATGCTAGGTAGTTGGTCTGCCACAGAGGTACACTCCTGGCCCAGCTTACTTACGTCTACACATTACATCAGCGTCACTGGCCATCTCTGTGATTTGGGCCCACTGCCATGTCAGGGCAACAAGGGGAACAAGGCTGAAGCTTGAACAGGGTCGCTGCTGCAGCGAGATGCATTAAGAGGAAGATCTGGATCTCCCATTCCATCTCCTCAGCTCTTGGCTCCCTCACCGTCCCTGAGCTTTCACAGCAAACTGGAGCTCACCAGCCATACATAGGCAGCCCCAGGGCCTGTGTGCGGGAGTCCACGTGGTTCTAGGTCCTCCTGATAGGCTTGAGGTAGGCACCTGGCTGGAGGAACAGGACGATCTCATCCAGGAGCAGCAAGGGGAGGCCTGAGTGAGTTCATACTCAGGAATAACAGCAGCCAGAAAGTGCAGCAAACTCATGCAGCAGACTGGCATGCTGTCCAGAAGACTCCTAAGTGGGATTTCATGCACTGGCCAATACGGCACGCCAAGGCAAAGTCCTGCCATGTGGTTGTCTCCAGTTTTCAGACCTAGGGGAAGAAGGATTTTCTTTTTATGCCCTTTTCTTTTTTATTTCTAATTTACTTTTCATCAATTTGCTTTTATACTGTGATGTATAAAACATGGGGACAACCTCAACCCCATGTATGGGGTAGAGGCTTACTTAAATCAGTCACTGTGCACCCGAGAGACAGCTCAGGAATGGCACGGAAAAGGGTGTTGCAGAAGTGTGCCCTTCCACATGGAATCTGTGATGAAGACTGTTTCTATTTGCACTTCTTAAAATTGTTTTTTTTCTGACACTGAATCTATTTAAGCTTATTTATAATGTATGTGTAAGAAACAACAGCAGTAGAGCTAGCTGTGGCAACACTCAGGAGGCTGAGGCAGGAAGATCACGGGGCCAGCCTGGACTACAAACAACTAAAGACAACAACATCCAAAAACAGCAGTAGAGAAACACCATATACTTACTTTAGAAACCCTGACAGGTCTTGAGACTTTCCCCTTCCCCTTAAGTCATTCTCTTCCTCCCCCAACTTCCCTCTTCTCCTGATGTGTGTTACTTCCCTGTCTCATTTTACTGCACTCCTGAGGAGGAAACCCAGGACTCAGCTGCTACCACTGAGCTATGGCCCAGCCCTCATTTACAATCTAAAAACCTCTTTAATAACAGAGCCATGCCTGTGTGCGCCATCCTGCCCTCTGCTCCTCTGCACTGTGGTCCTGAGGTTGAGTGATGCTTGCACATGTGGCTTCAGGTCACTGCGGCGCCTCTCTTCTCTGTAAGCTCTGCCTGTCTGTCATCTCAGAGCTGACTCCTTATTCCTTGCTCCCATGAGTTTTGAGGCTATGAACATTCTTGGAACTGCATCTTTTTCTGATTTCTCATTTGGGTGAAACTGACACCAAGATGGATTTGGGTTGGTTTACTTTATGAAATGATGTCTAACCATACCAACTAGAACACCAAAGTAATGCCAAGGGAGGAAGTTCAGAGCTGGGGGTCTGGAGGCAGCTGTGAGGGCAGGGAAGTACTCTGACAGTGGGGCTGGTAGCTTCTGGGGGAAGGTAGTGGAGTTCATGATCTCCCCATACTTCCTTCTCCTGTGCCAACTCCCTGCCATCCCTTAAGACATCCCCCACCTTCTAGGCTAGTTTCCCCTCCAGAGACATTCACCCTAGTTCAGCAGAGCCTATCCTTCATACCATAAACCCAGTTAGTTGCCTTGGCTCAGGGGATAGTGGTGGCAAATGTCTCAGCCCTGGCTCTAACTCTCTGTGTGGCCTGTACAAGTCTCAGTCTCCTCATCTTCATTATGGCGACCCTTCCAGCGTCCACCTGATAGAGGTCAAGTGAGGACTCCAGAAACTGTGCATATGAAGTAGTCAGCGTAATGCCTGGCACATGGTAGCTACTCCCCAGTGGCAGCAGTCATTGCCGTGCTCTTCCCTCCCCATACTTGCATGTCCCTAACTGTAGGAACTGTCCCCTATCCCTTTCTGTGGATTGAAACTTTGACAGAAGGGTGAGCTTTCTCTTCTAG
Seq C2 exon
GTACCTGCAAACCTTATGTCCTTTGAATGAGTATCTGCAGGACTTGGCGAGACTGCAAAGGCTTCTGAGAGCCTAGACTAGGTCTGTGGAGGAGAGCAGCTCTGGGCATAAGCTGTGGGCCAAGGCACTGGAGCCTCATCGCTGGACTCGAGGAATATGGCCATGGCCTCACAGTCCTGGATGGCTCCCCAGTGTGAGATCCACCTGTCAACCCACAGCAACTCTCATGAATCATTCTGCAGCAGCACCCCACCGGGTGGCTGTCAGACCCCAAACTGCGCACCCTATGCCCCCTCTCTGGGCCATCGTCTGTCCACCAGCTGCTTTTGCATCAGGGGAGCATTTGACCCATGTTGGGTTCTCCATGCTTTCTGCTGCACACAGAGTGGATGGCGTTAATCTTCGAGAGGGCTGGAAAGCAGAGACGGGCTGCTGGACAGGCTTGTTACACCCCAAGTGCACCGGCCACTCACCCACAGGGCCGCCTCCGATTTTGTATACCCTTAAAGCATCCTGTGTGTGTGTGCGCGCGGTGTGTGTGTGTGAGCGAGTGAGTGTGAACGCTCTGAGAAACATACATTTTGGCACAAGACTTGTGACATCACACACTTATTGGCTTTGAGTCCCTGCTTGAAGCTTTAGTTACAGCCTTGTCCTCTAAGAAAAGTCTGAAGGGAGTCCAGAAGCTCCGTGTTAAGGGTCCCTTGAGTTCTTTTACTGTAAACAAACAATGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038831-Ralgps1:NM_175211:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(22.3=80.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: