RnoINT0123954 @ rn6
Intron Retention
Gene
ENSRNOG00000016910 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:RGD Symbol;Acc:2319500]
Coordinates
chr3:12178853-12186660:-
Coord C1 exon
chr3:12186569-12186660
Coord A exon
chr3:12183270-12186568
Coord C2 exon
chr3:12178853-12183269
Length
3299 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
GGGCGAGCTTTCTCTTCTAGGTA
3' ss Score
7.57
Exon sequences
Seq C1 exon
GCAATGTTTACAAGTTCCAGACGGGCTCCCGTTTTCATGCGATACTGTGGCACAAGCATTTGGATGATGCGTGTAAAAGCAACAGGCCTCAG
Seq A exon
GTAACTTCCTCAGATCTTGCATGTCAGCAGAAACCTTTAGACAACAGGTCTCCCTTTTTCCCTCAGAGCCCACTAGGGATGCTCCCAAGGCACCTGTTCTAAGATTTTCCCATGAGTCAAGGCAACCCTTGCACGAATGAAGCCTGGCCTAGACCACTAAAAAAATGCAACAGACATACCCATTGGGGAACAGGGAGGTGGCAAGTGTGATGTCATCCAGTGTTCCAGCTCTAGCATCTATTTAGTTTGTCCCCCAGAGCTGATTTCATAGGGAAACTGCAAACTGACTAATAGGTCTGTTTCTCTGCCCGCTACCTGGGGAGTGTCTTAGTAATATATAAAATATTTAGGGACAACCATGTGCCAGGCAAGGCTACTGGACCTAGGTCTGGTCTAGCCTCTTCCTCTGCTGTTCCCACCCCCTTCCTTGTCACCCATGGCTTTACATGCAGCCGTTGGCAGAGTGTTTCTATGTCCCTATGTTGTGGGTTTTCTTAGTGTTTCCATTGTACACAGAGGGGCCTGAGGCTCGGAAGTGAAGGACACCTGTGCAAGGTGCCACAGTGAGTGAATGGTGGAGCTGGGACCCAACTCAGTTCACCTGATTCTCAACACCTTGTAGCTCCTGACTGAGAGTCCCTGTCATTGTCCCAGACAGAGAGCCAGGAGTACAGCCCCTGACGGGCACACCTGTCACAGAAATGGCAGCCTCCATCCTTAACACAGGTGGGGTTGAGTCGGAGTGTCCTTCCTGCATGCCACACGGGCAGCACTGATGCCACAAGGAAGCCCAGAGTACACTGACCTGTGCGCCTGCCGTGTGCCCACCCTGTCCTCACGACCAAATGTCAAAGCACATTCACTGTGGTGCCGTCCATGATAGGACACCAGAAACCTCCAGCCTGCCTGAGCTCCCTGAGCAACACCAGACAGCTATCAGCAAGATGGTGGCAGGCCTATGGAGGTCAGAAGGCTTTGGAGTAGGCAAGGATGATCTCATTTCTTTTAAATACACGTGAAGATTTACTGTATGTATGTGAGCACATTCATGTAAGATTTCTACGGTGGTACACAAGAAACTATAATTGTATAATTTTAGAGTGCTTACTTACCTGTGGCATAGATGATCAGATAGACAGACAAAGGCTTTTTCAGTGGTGCTGGAGGTTGACCCCTGGGCCTCAAGCATGCTGGGTAATTAGTCTGCCATAGAGGTACACTCCTGGCCAAGCTTGCTTATAGCTACCCATTACATCAGTGTCACTGCCCATCTCCCATTTGCGCCCACTGCCATCTCAGGGCAACAAGGAGAGCAAGAGGCTGAAGCTTGAACGAGGTCGCTGCTGCGGCAAGATGCATTAAGAGGAAAACCTGGATCTTCCATTCCAGTCTCATCAGCTTTGGGCTTCCTTCCCTTCCCTGAGCTATCAGCAAAGAGAAGCTCACCAGCCATACATAGGTGGCCCCAGGACCTGTATGCAAGACGCCATGTGGTTCTAGGTCTGCCTGGCAGCCTTGAGATAGGCACCTGGTGGGGGGACAAGACAATCTCAGCCAGGAGCAGCAAGGGGAGGCCTGAGTGACTTCATGTTCAGGAATAACAGCAGCCAGAAAGTGCAGCAAACACATGCAGCAGACTGGCATGTTGTCCAGGAGACTCCTCAGTGGGATTTCATGCACTGGCCAGTACGGTATGCCATGGCCAGGTCCTGTCATGTGTTTGTCTCCAGTGTTCAGACGTAGGGAAAGAAGGATTGTCTTTTTATACCTTGGTTCTTTTTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTCCTAGGCAAGCCCTCTACCACTGAGCTAAATCCCCAACCCCACCTTGTTTCTTTTTTATTTCCAATTTGCTTTTCACCAATTTGCTTTTATACTGTGATGTATAAAACCTGGGGACAACCTCAATACTCCATGGTAGAGGCTTACTTAAATCAGTCACCGTGCACCCGAGAGACAGCTCAGGAAAGGCATGGAAAAGGGCATCACAGCGGTGTGGCCTTCCTCATGGAATCTGTGATGAAGACTGGTTCTATCTGCACGTCTTAAACTTGTTTGTTCTGACACTGAATCTACTTAAGCTTATTTATAATGTGTGTGTAAGAAACAAACAACAGTAGAGCTAGATGTGGTAACACTCAGGAGGCTGAGGCAGGAAGATCATGGGGCCAGCCTGGGCTACATAAACAACCAAAGAAGACAACAAACAAAAACAGCAGTAGAGAAACACTATATACTCACCTCAGACAGAACCTAGAAACCCTGACAGGTCCTGAGACCTCCCCTCCCCTAAGTCAGTCTCTCCCTCCCTAACTCCCCTCCTCTCCTGGTGTGTGTTACTTCCCTGTCTTATTTTACTGTGGTCCTAGGGAGGAGACCCAGGCCTCAGCTGCTAGGCAAGTGCTGCCACTGAGCTATGCCCAGCCCTCATTCACAGTGTAAAAACCTCACTTAAAACAGCCATGCCTGTGTGCTCCCCCTGCTCCCTGCTCCTCTGCACCACGTGTGGCTACAGGGTCACTGCCACACCTCTCTTCTCCATCAGCTCTGCCTGTCATCTCAGAACTGAGTCCCTCCCTGTTCCTTGCTCCTATGAGGCCATGAACGTTCTTGGAACTGCATCTTTCTCTGATTTCTCGTTTTGGTGAAACTGACACCAAGATGGGTTTTTGTTTTTGTTTTTGTGAAATAGTGTCTAATCATACCAACTAGAACACAAAAGTAATGCCAAAGGGGGAAGTTCAGAGCTGGGGTCTAGAGGCAGCTGAGGGCCAGGCAGTGCTCTGGCAGGGAACTGGCAGCCTGTGGGGAGGTTTTGGAGAAGATGATCTTCCCATACTTGCACCTTCCTAGCCACTCTCCACCCTCCCTTAAGACATTCCCCACACTCTGGCCTAGTTTCCCCTCAGAGACAGTCACCACCACACCACACAGTTAGTTGTCTTTGACTGAGAGGATGGTGCTGAAGAATGTGGGTTCAGGTCCCAGCACTAACTCTATGTTTGGCCTCAGTCTCTTCATCTTCATTATGGTGACCCTTCTAGCATCTGCCCAATAGAGTTCATGTGAGGACTCCAGAAACAGTGCATATGAAACAGTCAGAGTATTGCCTGGCACAGGCAGTCACTCCCCAGTGGCAGTTCTCATTGCCATGTCCTTCCCTCCCCATACTTGTAAGGCCCTAACTGTAGGAACTACCCTACCCTTGACCCTTTCTGTGGATTGAAACTTTGACAAAAGGGCGAGCTTTCTCTTCTAG
Seq C2 exon
GTACCCGCAAACCTTATGTCATTTGAATGAGTATCTGCAGGACTTGGCGTGACAGCAAAGGCTTCTGAGAGCCTAGACTAGGTCTGGCGGAGGAGGGCAGCTCTGGGCGTAAGCTGTGGGCCAAGGCACTGGAGTCTCATAGCTGGACTCGAGGAATATGGCTGTGGCCTCACAGTCCTGGATGGCTCCCCAGTGTGAGATCCACCTATCAACCCACAGCAACTCTCATGAATCATCCTGCAGCAGCACCCCACCAGGTGGTTGTCAGACCCCAAACTGTACACCTCTCTGGACCATCATCTGTTCACCAGCTGCTTCTGCATCAGGGGAGCATTTGACCCATGTTGGGTTCTCCGTGCTTTGTGCTGCACACAGAGTAGATGGTGGTAATCTTCAAGAGGGCTGGAGAGCAGAGATGGGCTGCTGGACAGGCTTGTTACACCCCAAGTGCACAGGCCACTCACCCACAGGGCCGCCTCAGATTTTGTATACCCCCAAAAGCATCCTCTGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCTGAAAAACATACATTTTGGCACAAGACTTGTAACATCACATACTTACTGGCTTTGAGGCCCTGCTTGAAGCTCTAGTTACAGCCTTGTCCTCTAAGAAAAGTCTGAAGGGAGTCCAGAAGCTCCGTGTTAAGGGTCCCTTGAGTTCTTTTACTGTAAACAAACGATGCCTTAAATCGTGTCTCGTTTTCTGTTCCTATGGGTGCTATTCATCTGGACGGCCTGTTCCCTGGGCCCCAGGCCCTCCTGGGTCTTGTTGTCAGCCCGCCTGAGGCAGAATCATTTCAGGACCGTGTATTGGACACTGGCCTGCTTGCTCCCTGCCATGAGCTTTCCTGGTGGGCCTATGGCCTTCCTTCTCTTTCCCACTCCTGCCATGCTGGTGTGGGAATCTGGGGCCTTTTCTCCCAGCAGCTTGGAGGCCCCCATAGTGATCGGTGGTCAGAAGCTATGCCACCCCGCATTCTCCCACAGGACAGAATTGTGCTCCTGTCTTCTCACCCTTGCCACCACTGCCAGGGCCGGCCACACTGATTCCTGATCACACAGGGAGCTGAGTGACACGGAGGCCTTAAGCCCCCTCAGTCTTGTTCTAAATGTAGTCACCAGCAAGTTTTCCAAGTCCAAGGGCCCAGTTGTTGATGACCAGGTGACAAGAAAGCCAAACCCTAGGGAGTGAGATGTCCAGCCTCTGCATTCATGAACCTTTATCTGTCACCTGTTGTCATAAGTAAGGTGATTTTCACTTTGCACATTTTAATCCAAGTGTATTGCCCCTTGTCATCACTAATGCTCTCTGTCCCTCTTCCTCTTCTTCTTCCTCTTCCTCTTTCAATCTGGGTACCCTAACTCTGACAAGAAAAACCCTCAGTTTTCTGGAAAAGGCTGAATTTCTGGGTCCCTGTAGGTATCATATTAACCAATCATGAGTCTGTCCCAAGAACAGTGGAGAAGCTGCAGACAGCACCATGACCATGAACTTGCCACCAGAAAGCACTGCATTACAAACAAATGGTGACATGGCTCTAAACATGTGGATGACTTGGTGGGGGCAGGTAGTTGTCACCATGGAGGTACGTTTTGGTCAAGCCTTGCCGTACTCTGAAGCTAGCCTTCCTGTGGTCAGAGCCTGGATATTTTCATGCTGAGAGGAACTCCACGTGGTAAAGTTGATGGCATCAAACCTTGACCACAGCTGCCTTGCACATCCACCCACACCAGGGGTCCAGGTGTGTGCAGCGGATTCTTCCAACATCGTTCCAGCTAGAATCCAGAAGATGAAGGACAGTGTCAGACACTCCAGGCATCTCCAAGCAGAACCATATATGGTCACTCTTTAACCTCTACCAACCCTGATCCTGCCTGCTAACTCCTAGAAAGCCAGCATGTCAGCTTCTAGTTTCCTTGAGGCGCCTCTGCTCTGGAGTTCATACATGATCAGTGTCAGACATCAAAAGCCCCAGAACTTCAGTCCCACTCAGAGAACTTTCTGCCCTTTACAGGTTTGTCTTACCAGACACAAGTGTTTTCTTCCAGGCCTAATCTGAAAGAGCACAATCACAATTATTTTCCAAGTGTTTAATCTCCCTAATTGAAACCAAATTCCCTCCCCTCCCACAAGCATCCTTATCATGGACTCTTGAAGACAACTGCTTGGACTTTATTAGTGAAAAGCCTCATGGGACTCTTGTGAGCCTCGAACATGGCAGGAGAGCCCTGTAGATGGAGTTAAAAGATATTTGACTCTCCAAGCAGGGACTTAGGCCAAGCATACAAGCTCAGTGCTAATATCCCCAGTGCTGGCTTGTCGCAGGGGAGGTGGCCAGGTCACATGACAGGGGCAGAGGTCCTAGGTGGATTCTTAGCCTGGAAGGAAAATGTTCTGCACTTTTGCTCCATTGTCCATAGCACACATACTGTGAAACTGTTGGTGGTCCTGCCAGTTACTGCCTTGCAGACAGACCATGGCACCCCAACCTGAGAGCTGTAGAATGCCATTTAGAAACTGGGATGGGCAGCTGGTAGTATTATGAAGTCCCAAGAAAAGCCCACTCACTTACAATAGGAGTAACCTCTGTCCCTCTTTAATGTACAAGTTTTGTAACTCAAAGTTAGCCAAGTGTATGCTGGCAAGCAAGATACCTTGAGGAGACTTGACTTGGTAGGAAGCACCTGAACCACTCTCCTACATAAGCCAGCAGGAGAGTTTGGCCCTTCCCCTCCCCTGACCAGACGCCCCGGGGCATTTGTTGGACCAAGATGCTGAGCAGGTGGACACAGCCGTGTCTTGCTAGCAGGCTCTCTATATTTCTCCTTCTTACCAAGAAGGCCAGAGTCTCTTCCGTCACTTAACTCTTGCCTCTCAAGCCTAAGAAAGGTGTGCTGGTATTTTGTTTGTTTCCTTGTTTGTTTGTTACTATCAACTTTCAGGTGGAAAATGATCTGTAAAACTGGGAAGCCATTTATAAGCCAAGACTGCTTTCATCTGCATGTGGGGTCCAGAGCTTTGCAACCTCTATTGAATATTGCCAAAAGCACAGCTTCTCTTCTGTGTGACCCTATGTCATATTGATATGTTGGGTGATTTCATGTTATAAAACAAAAACAAAAACCCCACCCTGCACAAAGCTCTTTTGAAAGTGTATTTATTGTACAAACATTCATCCATATCTCTAGTGAATACTTCTTATTCACCAGGCTCTACCCAGACTGAAATGGCTAGAAACAAGACAAATCCAATGTTGACCTTTGTAGAACTTACCAGTCAGTGATCAAATAATCACCACCTCGCACGCCAACTTTGGCAAGACCCTGCCTCTCCTCTACCCCTGAATACAAATCTTGTGCATTGGTTCCTCCAGGAAGACTTCAGACTGAATGGGGATGTTGGGAGAGTAAGTTGCCATGAGTACTAGCTGGAGTCCCAACACTGGAAGCTGTCTGGCTCTGAACAGCCAGATACAGGTCTTTGTTCAAGAATGGTTACAAGGAGGACGCCAAAGGTAGAATGAGAGAGTAGGGTCTGAGTGCTTGCAGAATACACAACTCCCTCCCCTCCCTGTTTACTCTAACTTCAGTGTTCCATTCAAATACAGTATGAGTGGGAGCTGCAAGTCCTTGGGAGCCGAGGACTTGGACTTTGGTCCACCTTGTAACCTGCTGCTGCACAAGTGTGTGTCCCGTGGACAGCCCCAAATTGCCACTCACAGCAGCAAGCCATTTTGGAAGGACTGTGACCATTCAGTAATGAAGTAATAGTATTTATTAGTGAGGTATACTCTTTAATAAATTTTGTGCCAAAATGCATGTTTTCCCACTTAGCATTCAAAATGTTGTGTAGAGAGTAGTTTTCAATTTCTTATGTGTTCTTCCAAGTAAACTGGAAATAAGTTTTCACATCTTACTCTACATCTTACTCTGTTTCTTGTTAAATCTGCTACACCTCCCAAGCTTTTTTTTCCCAGCAGACCCTGCATGCAGTTATGTGAGGATTTTTCTCTAACATTTGTAAATTGTCTCATCTGCAATAACCATGGAACATCATCCCTCCTTGGGATTCTTTAGATTTTTGGTGAAGTATTTTGTTACCTCAGTCTTGTATCAAGTTGCTGTATTTTTCAGCTTGTTACACTGATAATTGTTTCACTAATTAAATACTTTCATGTACAGACATCTTTGTTTACTTTGAAATTAAATGTGTTTTCCAATAAATATCGTTCCATTTATTAGTGTCACATGCAGTCAATTTGGCAGGCAGCTGCTGTGCTACATGCAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016910:ENSRNOT00000022755:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(22.3=80.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]