HsaINT1028830 @ hg38
Intron Retention
Gene
ENSG00000136828 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:HGNC:16851]
Coordinates
chr9:127214751-127223164:+
Coord C1 exon
chr9:127214751-127214842
Coord A exon
chr9:127214843-127218739
Coord C2 exon
chr9:127218740-127223164
Length
3897 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
GGCTGAGCTTTCTCTTCTAGGTA
3' ss Score
8.97
Exon sequences
Seq C1 exon
GCAATGTTTACAAGTTTCAGACTGGTTCCCGATTTCATGCAATACTGTGGCACAAGCATTTGGATGATGCATGTAAAAGCAACAGGCCTCAG
Seq A exon
GTAAAGTCATCAAAATCCTGCTTGTCACCTGAAATATCCTCTCCCACCCTTGGAACTAAGGGTCTTTAGAAAACAGGGTTCCCTTCTTCTTTCAGAGCCCATTAGCCACACTCTCAGATACCCTCTTCTGATCAGCATCTTCCCTTGAGACAAGGCACCCCCTTGCTCAGCTTAGAACTAAGCCCAGCTCCAGACCAGAACTTTGAATCTGGTTCCTGTGTCTTTCCCACAATAGGAAATGCCACAGAAACACCCACTGGGGGATGATTATGAGCAGCTGTGATATCACCCCAGGATCAGGTTCTAGCATCTATTTAGGTCATCCCTGCCAAGAGCTGACTTCATGGGAATACTCCAGACTCACTAAAGGGCCTCCCTGCCCCACAACCCTTGGGAATAATGCGGCTAGCTAACTTACTGACAGCCAGCCATGGACCACGCAAAGCTGCTGGTGAAAGGGGGTCCCTAGCTTCTCAGTGTGTTTGAGCCAGCAGGATCTGTCTTGACATAGGCCCTCTCTGGCCTGGCTCATGGTATGGCCCCCTCCCCTGGTCGCCCCCAGCCGTCCCACGAAGGGTGTTATGCGAAATGTTTCCCATGCAGGAATTGGCTGAATTCTCTCAACATCCCTGTGAGGTAGATTCTCTTACTGTCTCCGTTTTATGCTGAGGGTCCTGAGGCTCAGAAAGGGGCAGACACACATTTAAGGTCCCACATTAGTGAGCAGTGGAGCTGGGATTGAACCCAGGTCTGCCTGACTCCCCCGATTGTCTGCTTGTTGCCCCTGAGCCCTCCTGCCTCTCCTGCCTCCACTTCCCTGGTAACCCCTGCAGCTGAGCAAAAGACTGGAAGCACATCCCCAGCTGTCAAGGCTTATGAGAGAAATGGCTACCTGAGCCCTCAGCAGCAGATGGGGGCGGGCTGAAGCCTCCTGCTCCCTGGGGGTCAGGTGGGCAGCACTGATGCTCCTGTCCCTAAGTGTCCATGTGTGTTTTCCCCAGGGATCAGCCAGAGGAGGAGCGGGGGAAGCAGGAGTCCTCTCCTAGCCCATCTTGGGAGGGCTAGGCGCATGGCATAGAGGGTGGCGCTTCAAGGAGGACAGTTAGGCGTAGTGCCTGGGAGTAGACTCAGCAGGCCCCTTGCAGGCAGCAGCTCTGAAGTCTGGGGGACCTCAGCAAAGGCAAGTTCATACCAGGCATTTGGGTCCAGGAGGATGGGGACTTCATGGTGCCACGTGGCACAGTCACAGACTTCCTGGTCCCTCCAAGTGGTTCTGGAAGCTGAAGGGAGGTCTCTAGTGACAGTGACAGGTCCTAGGGCTCTGTGCTCAGCTCGGTCTGTAACACAGATGAGGACAAATACAAGAAGCTGATTGCAATTACAGATGATAAGTTAGAAAGCAGAATTAGCAAGTTCTCAGAATTAGTCCTCGACCAACTAAAACAGGACAAGACCAATACAAGAATAAACATGAGGTGCCACAGGGAGGTTCCAAATAGATTGCACTTGATTCCCTTGACTCACCCATCTGACTTCGGGGAATTTGTCATAGGGATGTGTACACACATGTGCTCAAAGATGTGTTTAAGAATGTTCACTGCAGCATTGTTCTTGATAGGAACCAAAACCCTGGAAGCCTCTGTGACCCTTAGGGGGACCCTATTGTGTGACACTTGATAGTTATTAGAAAGAGGCAGATCAGGGCAAAAACATTTGGAAAGGATGATCTCATCTGTATAAAAGTTCTAAGATGATACACAAGAAATGGTAATTCTGTAGCTTCTAGAGAGCTTTATGTATAGTTTGTACACTGAATAAATGTAATTGGCCATCCGTATGACAGGAAGACAAGGGTTTTGGTCGGCAGCCATCTCAAGGTGATCCATTGAGACAAGGTGCCAAGACCTGAACAAGGCTGCCGCCGCCCCAGCTTGCATTAAGAGAGGAAGAGCATCCTGGCCTCCTCCATACTGGTCACACCATGTGTGTCTGGGGTCCCTCAGTAGCTCTGAGGGCCGCTCTCTTAAGAGCATAGCACACTGAAGCTCCCCTACCACACACAGGAAGCCGGAGCAGCTCCAGGTCCAACAGGAACTGACAGCCACGAGGTGGACCACCTGGAGGGCGGTGCGGGGAAGGAGGCAGGGCCCTGTGCCTGAAGCCTGGGCACCATGGTGGCCCCAGTCAGGAGCAACAGTGGTAGCCCTGAGTAAAACCCATTGTCCCTCTTTGGAGGAGCGGCCAGAGGATGACAGCAGCCCCAGCAGGCAGCAGTGCCTGGGCAGGCTGATCCAGCAGAGCACTAATGGGTCAGTTTCATGTATTGGCAGATGTGGTGTAGCATGGCAAGGCTACAAGTTTTAAGGATTTTTGTCTGATTTTCAGACCTGGAGGAGGGGATTTTTCTTCCTACTTTCCCCCTTTTTTATTTCTAATTTACTTTCAACCAAATATTCCCACTATGTGCTATATGTAATAATAAAAAGTTGACAACAACTGAAATATTCAACAGCAGAGGATGATTTAAGTGAATCACAGTACATCCGTGTGATGGAATGCCAGGAGGGTGTAAGAAAGAGTGTGACAGAAATGCATCTATTCACAAGGAAACATCGCAGTGACTAGAGTGATTTTCTGTTCTGTGGAACTGCATGTCCTAAACTTGTTTTTATTAACACTGAATACACTTAAACCTTATCTATAACATATGTATAGGTATAAACAACAGCAATAAAACACCTTATTGCCACCATGAGCCTAACAGCAGAGCCACCAGGGCCTTGGAATGCTGTCCCTCACCATGGCCTCTTCCTAATTCGGTTTCTCTCCCTCCCACCTGTGCCCCAGCACCACTCTCCTGATTTGTTTGCTGATTATTCCTTTAGAATTGCAGGTCACGTACTTGATTCCTTCATGTGTTGTCTGGGGTGCATTTTTAAACTTTCTTATAAATAGAACCATAAAGATGCATTTTCTTGTGTCTTGCTTTTCTCCTGTAACATGTTCCTAGGATTCATCTGTGTTACCACATGTAGCAGTCATTCATTTATTTTTACTCATTTTGTTTTTATTAGTTCTTCTGTTGGACATCCCAGGACTGATTTTCCGCTTTTTTGCTATAGTGAACAGTACTGCTAATGACCATTCTTATAACTGTCTCCTGGTACATGGAGATGCATTTTTTTCCTAATTCATAGTTTGACCAAACTGACACCAAAATGGATTTTTTTAAATGAAATTATTTCTAATCAAATCCTCCCACAGCAGTGCTGAGGGAGGAGGTCTGGGGCTGAGGACCTGTTGGCAGCTTTTGGGGGTGGCAGAAACACTCTGACCTTGGGGCTAGTGGTCCCGCCAGTAAAGGGGTCTAGGATCTTGTCCTGAGGGCAGAGCTGTGGGAAGGTCTTGGGGTTTCTGATATCCCTGAACTGACTCTTTCTCCCATGCTTCCCTTTGCCAACTCCAGCCACCCACCCTCTGCACACACCTCAGGCCTTCAGGATTTGTCTCTCTGCCCCAAGCGCAGTTTGATTTTCACTGAAGGAGATAGGTTAAGAGCATGGGCTCTGGGTTCTTAGCCCTGCTGCTTACTTGCTGTGTACTGAACCTCCCTAAGCCTCAGTTTCCTGTCTTTGTAATGAGGACGATCCCAGTGCCTGCCCCAGGGGTTGAAGTGAGGACTCAAGAACGCAGTGCATGCGGTGGATTCAGAGCAGTGCCTGGCACGCAGCTGCCACTTCACATGGGGTGGCTATTGTTATTGCCATACCCTCTCCCTACCCAACCTGCTCATTCCCAGACTCACGGGGAAAGGCCTGTCCCTTCCCCTAGGGACCACCACCCCTTGTCCTTCTCTGAGGTCGGAACTTTAACAAGAGGCTGAGCTTTCTCTTCTAG
Seq C2 exon
GTACCTGCAAACCTTATGTCATTTGAGTAAGTCTCTGCAGGACGTGGCATGACTTCAGAGGCTTCTGGGAACCCAGGCTGGGCCTGGTGGTGAAGAGCAGTCCTGGGCACAGGCTGTGAGCCAGGGTGCTGGGAAACTCACAGCTGGACTCAGGGGACACGGCCTGTGGCCTCACCATCCCAGAGGGCTTCACCAGTGTGGGATCCACCTGTCAGTCCCCAGCGACTCTCATGACACTCATTCTGCAGCACCGCCTCTTGGGGCAGTGGTCAGACCCCACACGCCCTCTCTGGGCCCACCACCTGCATCTGCGACTAGAGAGCACCCGGCCCACGTTGGGTTCTCAGTGCTTTCTACTGCACAGAGTGGACAGCGCTAACTAACCTGTGAGAGGGGCCCGAGAGAAGGAACAGCTGTGGAACAGGCTTTTTACACCCCAAGTGCATGGGGTTGCTCGCCCACAGGGCTGCCTCAGATTTTGTACAACCCCGAAGCGTCCTCTGCGTGTGCGTGCTGTACGTGTGTGTGTGTGTGTGAGCGAGTGTGAACTCTTCAAGAAACATGCATTTTGGCACAAGACTCGTGACATCACACACTTCATTCGCTTTGAGGCCCTGCTTTAACCTTAAGTTATAGCCCTGTCCACCGAGGAAGGTCAGGGTGAGAGCCTAGATTCCTCCTGTGTCAAGGGTCCCTCGCATTCTTTTACTGTAAACAAACAATGCCTTAAATTGTGTCTTGTTTTCTGTTCCTATGGGTGCTATTCATCTGGAAGGCCTGCTTCCAGGCCTCTTTGCTGTCAGCCCTTCTGAGACAGGACCTGGCTTCAGGACTGTGGACTGGGCTGCTGGCCTGCTTGCTTCCTCCCTTCCCCATTCCTAGCAGGGCCTGAGGCCCTCCTCTTCTCGCCCTTCCCACCATGCCAGAATGGGAAGTTGTGACGTTGCAGCTCCAACCGACGTGCTCATAGTGATCAGCTGTGCAGGAGCCATGAGGCACCAACCTCTCCCCGCAGGGCAAAGCCTGTGCCCCCATCATCTCACTCCTTTGCCTGCACTGCCAGGGTGGGGCCCACCAAGATTCCTGATCATGACGGGAAGCTGAGTGACCCTGAGGCCTTAAGCTTCCCCAGTCTTGGCCCCAAATGCAGTCACCAGCAAGTTTTCCATTTTCCAAGTCCAAGGGCACAATTGTTGATGACCGTGTGACAATAGAGCGAAGCCCCGGGGAGTGAACGGTCCAACCTCTGCATTCAGTTAGGAGCTCTTCACATGAATCACATCCTTATCTGTCACCTTGTGTCACATTTTAAAGTGACTTTTATTTTGCACAAATAATTTTTATTCAGAATAATAAATCACTCTTTATCATAGTATCTTCTCTTCCCTCTTCCCCTTTAGTTTGGATAGCCTAACTCTGAGAAGTTAACCCTTAAACAGTTTTCTGGAAGAGACTGAATTTCTGGGTCCTTGCAGCTGTGATGGTTTCAGAGCTCAGACTGATCAGGCATCAAGCTACCCTCAAGAGTTTCTGGGCTGGATGTTTCAGAACAACATCTACACCAGTAAAGTGTAATAGGTCAGTTTCAAAACGACCAAAAGACCCACCACTGTATTTTGACCAAATAATGACAACTTCTTTAGAAATTTGAATGGCTTGGTGAGGAAAGTAGTTGTCACCAGGGCCTCATTTTGTAGTTGAGCCTTACAATGCTTAGTAGTTCATCTTCTTTTTGAGCAAAGACTAGAATACTTTCCTCCTAAGAGAAACTCCCAGGTGATAAAAGTTGATGCCATCAAACCTTGACACCGGGTGCTCTGCACACCCACGCGGATGTTGCACCTCATTCTCCCGATGACTATTCAAATCAGCATCTAGAGGCTGAATGACAATGCCAAACACTCCACCTCTGATCAGAACCATGCAGTGTTAACACTTTAACCTACATTGAATCTGATTCTACCTGTTAACTTTTAAAAAGTCGTAAGTTTGGATGAAAGTGCAAGATGTGGAACATCAACTACCTATTTTCCTTGGGTTTTTCCACTCTGCAAACTGTCCTGGTTTTTCACACCAATGAAGTATTATAGATGCCAATCCAAAACCTCAGAATTTCAGGCACCACAAAAACAGGTAATTTTCTATCCCTTATAAGTTTGTCTTTTCTTTCAGAAACATCTCTTAGCCTAATTTGAAATAGCACAATCACAATTCAAAATGTTTAGTCTTCTCACTAATTGAGTCTGCTTCCACGTCCTCTCCCAGGAACATTCTTAGCTCGGACTCTTGAAGAATCTCTTTAGATTTTGTTGGCAAAAGCCTTATAGAAGCAGTAAGAGGCTTGACCACGCCGGAAGAGTCCTGGAGCTAAAGCTGGAAGACACTCAGCTCTCTAAGCAGGGGCTCGGCCAAACATGGGAGTTAAGTGCTGCTTGTCTTCCCAGTGTTGGTTTGAACCCTGTGAGCCTGAGACAGAGAGGGCCAGGCACCAACCACAAGGCGGGAAAGTCCATGGGTAGACCCTCCCCCTGGAGGGAAGCATTTCTAGTTTTTGCTCCTTGACTGTCCAGAGTGTACAAATGTTCATAACGCCATTGAAGGGATTATTTCTTGCATGCATATGCTGAATTTTTTTAAGCAAATGGATCATGGCACCCCAAAATGAAAGTTATAGAAAGCTGTCTACAACTGTGGAGTTGGTAGCTGGTAACATTGTTGTCTCAAGAACAACTCACCTCTCTCCCTAGGACTAATTTTTGTCTCTCTCAGTTGAACATGTTTTGTCATTCAAGATCAGTCAGGTGCATTCTGGCAACTGACATACTTGATGGAGGATTGATTCGGTAGAGAGCAGTAGAAATCTTGTTCTAACTGTGCCTGGTGAGAGACTTTGGCCCCCTCCCTCCCTATAAGGCTGTGGAACCTGAGGAAGTAGATACTTGAAGAGATTCTGTTTAGGAAGAAACTCACTCTCTTTTGCCAGTTGAATTTATAGAGCATTTTTTTTCTTACCAAGATGGCCAGTATCATTTTACCCCCACCTCCCAAGCCCCAAGAGGTGTACCTTTTCAGATGCCATTTTACAGGCGGAAATGCTCCATGAAACAGGAAGCCACTTGCAAGCAACATCTGCTCTGTTCCTCAGGTGGGGCCCAGAGCCCTTCCCCGAGACTGCTGATGTCTGTAACCACTGGGGAGCACTGCCAAAAATACAGCTTTCTGGTTTGTGAGCCCATAAATGACTTAAATCAGCTTTACATCATTTTTACATATCAAGTGGTTTCATGTTAAAAAACAAACTCCTAGTCCTTTAGAAATAACAGATTCTCTGCACAAAACCACCCATTCATTCATTTATTCATTCACAGCACTAGCAAGTGCTGCCTATGCTGAGAACAAGTCAGATCTGATCCCTGCCCTCATGGACCTGACCACTCAACAAACAGTCCCCACCACACCTATCTCCTTAGGCAAGACTTTGCCTCTCTCCTAGTCCTGAGTATAAATCCTGTGCATAGATTCCTCTAGAAAGGCATCAAAAGGCTCAACAGACTGAATGGCCTCTTGGTCTGCGAAAATTCAGTTGCAATGAGGATGAAGTCACTATCCTAGAGGCTGCTTGGCCCAGAAGAGCCAGGCACAGAGCTGCAGTTGGGCACGCCAAGGATTCCAAAGGTGGAATGAGAGAGTAGGGTCAAACTGTCACAGTATCTGCTCCATAGGTTTCTGTTTTTAATTTCAATGTTAAATACAACTACAATATGAGCGAGAACTGCATTTTCTTGGGTGTTGAGAACTTGTACCATGGACTTCAGACCGCCTTGCAGCCGTATGCTGCACAAGCGTGTACACCCCCTGGGCAGCCTCAAAACCCCGCTTACAGCAGCAACACAGGAGATCATCTGTCCATTTTAGAACCATTAATCTCTTTATCCATTGCTGAACGACTGTGACTATTCAGTAACGAAGTAATAGTAATTAATTAGTATGGTATAATCTTTAATAAATTTCGTGCCAAAATGCATGGTTTTCCACTTAGCATTCAAAATGTTGCATAGAGAGTAGTTTTCAATTTCTTATGTACTCTTCGAAGTAAGTTGAAAATCAGTTTCTACATTTTAATTCGTTTCCTGTTAAATCTGTTGCACTCTCCTGGGCTGTCTTTTTCTCCAGCAGACCCCTGCATGCAGTTGTGTAAGGACTTTCTCTAATTCTTGTGAATCGTCTCACCCGCAGTAACCACTGAACGTCAATCAGCCCTCCATGGGGTTCTTTCGATTTTTGGTGAAGTATTTTGTTACCTCAGTCTTGTATCAAGTTGCTGTATTTTTCAGCTTGTTACATTGATAATAATTATTTCACTAATTAAATACTTTAATGTACAAACATCTTTGTTTACTTTGAAATTAAATGTGTTTTCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136828:ENST00000259351:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(22.3=80.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains