GgaINT0124705 @ galGal3
Intron Retention
Gene
ENSGALG00000000906 | RALGPS1
Description
NA
Coordinates
chr17:11087626-11088713:+
Coord C1 exon
chr17:11087626-11087717
Coord A exon
chr17:11087718-11088683
Coord C2 exon
chr17:11088684-11088713
Length
966 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTATGTACATTCTCTTCCAGGCA
3' ss Score
9.51
Exon sequences
Seq C1 exon
GTAATGTTTACAAGTTCCAGACTGGTTCAAGGTTTCATGCAATATTATGGCATAAGCATTTGGATGATGCGTGCAAAAGCAACAAGCCTCAG
Seq A exon
GTAAGACTGGCAAACCGTCTCTACCTGCTTTTACATATTTTGCAGAAAACCCGTAATAGGAGATACTTCTTTTAAATCTGAATGCACATACAGTCCTGCGGGGACAAGTCATTTTGTATACTTTTTTCAATAGTTTTTCAGCTTACCTATAAGTTTGGTGACATTAACAGTGTACAGCCTCTGTAATTGCATCTTCAAGTAGTAAGGTAGCCCTGTCTTTACTTCAGAAGGGGCTTAATAATGAACAAAGAAAGTAGCCAACATACTGGCAATTAAACTGATGACTGGGTTTATAGCTACCATTGAAGAGAGTGTCCTATAAAATGCTTTTTGTCCTTTGTATAGCAGCTTCATTTTTCAGGAAAGAAAAAATTCATTCTTGAAAGGTTTCCAGAGGCTTATATTAATAGAGTGCTCAGCTACACAGGACATGTAACAGGACACAGCTCAAGAATCTTATTTACACGTACGTGCACATCCCATGCATACTAATAACTTCTTGGTATACTTTGACTGGATTTGGTCCACAAGGAGAAAAATCATTTGAGTCTTTTATCTTTTCTTTCAGTTACGGGGTTAGCTCTCTTTTGGACCTGTTTGAGACTGATGAAATTTTCTCATTGAATAATGTATTATTGTCCCACTGGATTTAGATTTCATATCAGGGAAATTTTTCACTCAGAGGGTGGTGGCACACTGGAACAGGCTGCCCAGAGAGGTTGTGGGTGCCCCATCCCTGGAAGTGTTCAAGGCCAGGTTGTACGTAGCCCTGGGAAACGTGATCTGGTGCCTGATTTAGTGGTTGGCAACTCTCCCTGCAGCAGGAGTGCTGGAACTAGATAGTCTTTGAGGTCCCTTGCAACCCAAGCCATTCTATTATTCTATGATTTTGTAACCTTGCAGCTTCCCAAAGCTGTTATATGCTGAGGAGCAATATACTGCTGAATTATGTACATTCTCTTCCAG
Seq C2 exon
GCACCTGCTAATCTAATGTCATTTGAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906:ENSGALT00000001330:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(22.3=80.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]