MmuINT0131367 @ mm10
Intron Retention
Gene
ENSMUSG00000038831 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:MGI Symbol;Acc:MGI:1922008]
Coordinates
chr2:33133421-33141086:-
Coord C1 exon
chr2:33140995-33141086
Coord A exon
chr2:33137710-33140994
Coord C2 exon
chr2:33133421-33137709
Length
3285 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
GGGTGAGCTTTCTCTTCTAGGTA
3' ss Score
8.33
Exon sequences
Seq C1 exon
GCAATGTTTACAAGTTCCAGACGGGCTCCCGTTTCCATGCGATACTGTGGCACAAGCATTTGGATGATGCATGTAAAAGCAGCAGGCCTCAG
Seq A exon
GTAACATCCCTCAGATCTGTGTCAGCAGAATCCTGTAGACAGCAGGTCTCCCATCTGCCCTCAGAGTTCACCAGGTTTGTTCCTAGGTGCCCACTCAAAGGTTTTCCCATGAGTCAAGGCAACCCTTGCATGAATGAAGCCTGGCCTAAACTAGAATGTAATAACCTTTCCACTAGAGAAAATGCAACAGATATAGCCATTAGGGGACAGTGAGGTGGCAAGTGTGACATCATCCAGTGTCCAGCTCTAGCATCTATTTAGTCTGTTCCCCAGAGCTGATTTCATTGGAAAAATGCAAATTGACCAATAGGTCTGTCCCTCTGCCTGGGGAGTGTCCTAGTAATATCTCAAGTATTTAGGGGCAACCATGTGCCAGGCAAGGCACAGAACCTAGGTCCTGGTCTAGCCTCTTCCTCTGCTGTTCCCACTCCTCTCCTTGACACCCATGACTTTACATGCAGCCATGTCCCTATGATGTGGGTTCTCTTACTGTCTCCATTGTACTCTGAGGAGCCTAAGGCTCAGAAGTGAAGGACACCTGTGCAAGGGCCCATTGTGAGTGAGTGGTGGAGCTGGGACCCAACTCCATCCACCTGATCCACAACTCTGACCTCATAGCTCCTGACTGAGAGTCCCTGTCATTGTACCAGACAGAGAGAGCCAGGAGTACAGCCCCTACTGGGCAGACCTGTGAAGGAATGGCAGCCTCCATCCTTAACACAGGTGGGGTTGAGTTGGAACATCTTGCTCCCTGCATGTCACGTGGGCAGTATTGATGCCACAAGGAAGCCCAAAGTAAACTACCCTGTCCTCAGGACCTGTGGGCCCGCGGGTGTGCTCACCCTGTCCTCACCATGTCCTTACAACCAAATGTGAAAGCATGCTCATCATGGCACTGTCCATGATAGAACACCAGAAACCTCCAGCCTGCCTGAGATTCCTGAGCAACACCAGATAGCTACCAGAAATATGGTGGCAGGTCTAAGGAGGTCTAAAAGGCGTTGGGGTAGGCAAGGATGACTGCATTTGCTTTTAAATGTTTGTGAATATTTACTATATGTATGTGAGCATAGTCATGTAAAATCTCTACAGTGATATACAAGAAACTATAATCCTATAATTTTAGAGTGCTTATTTACCTGTGAGATAGACGAGCAGATAGATGCACGAAGTCTTTTTCAGTGGTGCTGAGGTTGAGCCCTGGGCCTCAGACATGCTAGGTAGTTGGTCTGCCACAGAGGTACACTCCTGGCCCAGCTTACTTACGTCTACACATTACATCAGCGTCACTGGCCATCTCTGTGATTTGGGCCCACTGCCATGTCAGGGCAACAAGGGGAACAAGGCTGAAGCTTGAACAGGGTCGCTGCTGCAGCGAGATGCATTAAGAGGAAGATCTGGATCTCCCATTCCATCTCCTCAGCTCTTGGCTCCCTCACCGTCCCTGAGCTTTCACAGCAAACTGGAGCTCACCAGCCATACATAGGCAGCCCCAGGGCCTGTGTGCGGGAGTCCACGTGGTTCTAGGTCCTCCTGATAGGCTTGAGGTAGGCACCTGGCTGGAGGAACAGGACGATCTCATCCAGGAGCAGCAAGGGGAGGCCTGAGTGAGTTCATACTCAGGAATAACAGCAGCCAGAAAGTGCAGCAAACTCATGCAGCAGACTGGCATGCTGTCCAGAAGACTCCTAAGTGGGATTTCATGCACTGGCCAATACGGCACGCCAAGGCAAAGTCCTGCCATGTGGTTGTCTCCAGTTTTCAGACCTAGGGGAAGAAGGATTTTCTTTTTATGCCCTTTTCTTTTTTATTTCTAATTTACTTTTCATCAATTTGCTTTTATACTGTGATGTATAAAACATGGGGACAACCTCAACCCCATGTATGGGGTAGAGGCTTACTTAAATCAGTCACTGTGCACCCGAGAGACAGCTCAGGAATGGCACGGAAAAGGGTGTTGCAGAAGTGTGCCCTTCCACATGGAATCTGTGATGAAGACTGTTTCTATTTGCACTTCTTAAAATTGTTTTTTTTCTGACACTGAATCTATTTAAGCTTATTTATAATGTATGTGTAAGAAACAACAGCAGTAGAGCTAGCTGTGGCAACACTCAGGAGGCTGAGGCAGGAAGATCACGGGGCCAGCCTGGACTACAAACAACTAAAGACAACAACATCCAAAAACAGCAGTAGAGAAACACCATATACTTACTTTAGAAACCCTGACAGGTCTTGAGACTTTCCCCTTCCCCTTAAGTCATTCTCTTCCTCCCCCAACTTCCCTCTTCTCCTGATGTGTGTTACTTCCCTGTCTCATTTTACTGCACTCCTGAGGAGGAAACCCAGGACTCAGCTGCTACCACTGAGCTATGGCCCAGCCCTCATTTACAATCTAAAAACCTCTTTAATAACAGAGCCATGCCTGTGTGCGCCATCCTGCCCTCTGCTCCTCTGCACTGTGGTCCTGAGGTTGAGTGATGCTTGCACATGTGGCTTCAGGTCACTGCGGCGCCTCTCTTCTCTGTAAGCTCTGCCTGTCTGTCATCTCAGAGCTGACTCCTTATTCCTTGCTCCCATGAGTTTTGAGGCTATGAACATTCTTGGAACTGCATCTTTTTCTGATTTCTCATTTGGGTGAAACTGACACCAAGATGGATTTGGGTTGGTTTACTTTATGAAATGATGTCTAACCATACCAACTAGAACACCAAAGTAATGCCAAGGGAGGAAGTTCAGAGCTGGGGGTCTGGAGGCAGCTGTGAGGGCAGGGAAGTACTCTGACAGTGGGGCTGGTAGCTTCTGGGGGAAGGTAGTGGAGTTCATGATCTCCCCATACTTCCTTCTCCTGTGCCAACTCCCTGCCATCCCTTAAGACATCCCCCACCTTCTAGGCTAGTTTCCCCTCCAGAGACATTCACCCTAGTTCAGCAGAGCCTATCCTTCATACCATAAACCCAGTTAGTTGCCTTGGCTCAGGGGATAGTGGTGGCAAATGTCTCAGCCCTGGCTCTAACTCTCTGTGTGGCCTGTACAAGTCTCAGTCTCCTCATCTTCATTATGGCGACCCTTCCAGCGTCCACCTGATAGAGGTCAAGTGAGGACTCCAGAAACTGTGCATATGAAGTAGTCAGCGTAATGCCTGGCACATGGTAGCTACTCCCCAGTGGCAGCAGTCATTGCCGTGCTCTTCCCTCCCCATACTTGCATGTCCCTAACTGTAGGAACTGTCCCCTATCCCTTTCTGTGGATTGAAACTTTGACAGAAGGGTGAGCTTTCTCTTCTAG
Seq C2 exon
GTACCTGCAAACCTTATGTCCTTTGAATGAGTATCTGCAGGACTTGGCGAGACTGCAAAGGCTTCTGAGAGCCTAGACTAGGTCTGTGGAGGAGAGCAGCTCTGGGCATAAGCTGTGGGCCAAGGCACTGGAGCCTCATCGCTGGACTCGAGGAATATGGCCATGGCCTCACAGTCCTGGATGGCTCCCCAGTGTGAGATCCACCTGTCAACCCACAGCAACTCTCATGAATCATTCTGCAGCAGCACCCCACCGGGTGGCTGTCAGACCCCAAACTGCGCACCCTATGCCCCCTCTCTGGGCCATCGTCTGTCCACCAGCTGCTTTTGCATCAGGGGAGCATTTGACCCATGTTGGGTTCTCCATGCTTTCTGCTGCACACAGAGTGGATGGCGTTAATCTTCGAGAGGGCTGGAAAGCAGAGACGGGCTGCTGGACAGGCTTGTTACACCCCAAGTGCACCGGCCACTCACCCACAGGGCCGCCTCCGATTTTGTATACCCTTAAAGCATCCTGTGTGTGTGTGCGCGCGGTGTGTGTGTGTGAGCGAGTGAGTGTGAACGCTCTGAGAAACATACATTTTGGCACAAGACTTGTGACATCACACACTTATTGGCTTTGAGTCCCTGCTTGAAGCTTTAGTTACAGCCTTGTCCTCTAAGAAAAGTCTGAAGGGAGTCCAGAAGCTCCGTGTTAAGGGTCCCTTGAGTTCTTTTACTGTAAACAAACAATGCCTTAAATCGTGTCTTGTTTTCTGTTCCTATGGGTGCTATTCATCTGGATGGCCTGTTCCCTGGGCCCCAGGCCCTCCTGGGTCTTGTTGTCAGCCCGCCTGAGGCAGAATCCATTTCAGGACCGTGTACTGGGCACTGGCCTGCTTGCTCCCCACCACGAGCTTTCCTGGTGGTCCTATGGGCCCTCCTTATCTCGCCCACTCCTGCTATGCTGGTGTGGGAAGCTGGGACCTTTTCTCCCAGCAGCGTGGAGGCCCCCACAGTGACCGGTGGTCAGAAGCTGTGCCACCCCGCATTCTCCCACGGGGCAGAATTACGCTCCTTTCCTCACCCTTGCCACCACTGCCAGGGCCGGCCACACTGATTCCTGATCACACAGGGAGCTGAGTGACAAGGGGGCCTAAGCCCCCTCAGTCTTGCCCCTAAATGCAGTCACCAGCAAGTTCTCATCCAAGTCCAAGGGCCCAGTTCTTGATGACCAGGTGAGAAGAGAGCCAAACCCTAGGGAGTGAGATGTCCAGCCTCTGCATTCATGAACAAGGACCTATCTGTCACCTGTTGTCATAAATAAGGTGATTTTTACTTTGCACATTTTAATTCAAGTGTATTGCCCTTTGTCATCACTGATGCTCTCTGTCCTTCTTCCTCTTCCTCTTCCTCCTTGAATCTGGGTACCCTAACCCTGAGAAGAAAACCCTCAGTTTTCTGGAAAAGGCTGAATGTCTGGGTCCCTGTGGGTATCATGGTTTTACACAGTAACCCAATCATGAAACCATCCCAACAATAATGGAGAAGCTGCAGACAACACCATAACCATGAACTTACCACCAGAAAGCACTGTATTACAAACAAATGGTGACATGTCTCTAAAACATGGATGACTTGATGGGGTGATTAGTTGTTGTCATGGCCGTACGTTTGTTGTACTCTGAAGCTAGCCTTCCTGTGGGCAGAGCCTGGATATTTTCATGCCAAGAGAAACTCCACATGGTAAAGTTGATGCCATCAAACCTTGACCACAGCTGCCTTGCACATCCACCCCCACCAGTGGTCCAGCTGTGTGCACTAGCTGTATGCACTGGATTCTATCAACGTTGCTCCAGTTAGAATCCAGAAGATGGATGACGGTGTCAGACACTTGAGGCACCTCCAAGCAGAACCATTCGTGGTCCACTTTAATCTATTCCAACTCCAAACCTGCCTGCCTGCCTGCCTGTTAACTCCTAGAAAGCCAGACCATCAGCTGCTAGTTTCCTTTAGGTGTCTGCTTTTGGGCTCATTGTTTGGATTCTTGCATGTGCAGTGTCAAGACATCAAAACCCCAGAACTTCATCCCACTCAAATAACTTCCTGCCCTTTACAGATTTGTCTTATGAGACACAGTGTTTTCTTCCAGGCCTAATCTGAAAGAGCACAATCACAATTATTTTCAAAGTGTTTAATCTTCCTAAATGAAGCCAAACTCCCCTCCCACAAGCATCCTTACCATGAACTCTTGAAGACAACTGCTTGAACTTTATTAGTGAAAAGCCTTGTAGGACTTTTGTGAGCCTTGAAGGTAGTGGGAAAGCCCTGTCTATGGAGTTAAAAGATATTTGTCTCTCCAAGCAGGGCCTTAGGCCAAGCATACAAGCTCAGTGCTGATATCCTCGGCACAGCTTGTCACACAAGGCTGCAAGGGGAGGTGGCCAGGTCACATGACAGAGTCAGTGGTCCTTTGGTGGACTCTTAGCCTTGAAGGAAGCTGTTCTGCACTTTTGCTCCACTGTCCATCGTACACAAATACTGTGAAACTGTTGGAGACAGACCATGGCACCCCAAACTGAGAGCTGTAGAATGCTGTTTAGAAACTGGGATGGGCAGCTGGTAGAATTAGGAAGTCCCAAGAAAAGCCTTCTCACTCACAATAAGAGTAAACCTCTGTCCCCTTTCCAGTGTACAAGTTTTGCAATACAAGGTCAGCCAAGTGTCCGCTGGCAAGCAAGATACCTTGTGGATGCTGGACTTGGTGGGAAACACTCCTACACAAGCCAGCAGGAGAGTCCGGCCTTCCCCTGCCCTGGCTGAATGCCTTGGGGCACTTGATGCTGAGCAGGTAGACACATCCGTGGCTCGCCAACAGGCTCTCTGTATTTCTCCTCCTTACCAAGATGGCCAGTGTTTCTTCCATCAGTTTACTCTTGCCTCTCGAGCCTAAGAAAGGTGTGGTGGTTTTTTGTTTGTTTTGTTTATTTTTTAATATCAATTTTCAGATGGAAAATGATCTGTAAAACTGGGAAGCCATTTATAAGCCAAGGCTGCTTTAATCTGCACGTGGCATCCAGAGCTTTGCAACCTCTATTGAATATTGCCAAAAGCACAGCTTCTCTTCTGTGTGACCCTTAAACTGTCCCTGTGTCATATTGATATGTTGGGTGATTTCATGTTATAAAACAAACAAAAAACCCACCCTGCACAAAGCCCTTTTGAAAGTGTATTTATTGCATAAACATTCATATGTCAAGTGAATACTTCTTATACCCCAGGCTCTACCCAGACTGAAAAAGGCTAGAAACAAGACAAATCCAATTTTGGCCTTTGTAGAACTTAACCAGTCAATGACCAAATAATTACCACCTCACAAGCCAACTTTGGCAAGACCCTATCTCTCCCCTACTCCTGAATACAATCGTGTGCATTGGTTCTTCCAGGAAGACCAGATTGAATGGAAATGTTGGGAGAGTAAGTTGCATTGAGGACTTGCTGGAGTCCCGACATGGGAGGCTGGCTGGCTCTAAGCAGCCAGATTCTGATCTGTGTTCAAGAATGGTTCCAGGGAAGACGCCAAAGGCAGGATGAGAGAGTAGGGTCTGAGTGCTTGCCGTACGCACAGCCCCCCACCCCGTTTACTCTGTAACTTCAGTGTTAATTCATATACAGTATGAGTGGGAGCTGCGTGTCCCTGGGAGCCGAGGACTTGGACTTTGGTCCATCTTGTAAGCTGCTGCTGCTGCACAAGTGTGTGTCCCATGGACAGCCCCAAATTGCCACTCACCGCAGCAAGGTGATAGGTCATCTGCCATTTTGGAAGGACTTTGACCATTCAGTAATGAAATAATAGTAATTCATTTATTAGTGAGGCATACTCTTTAATAAATTTTGTGCCAAAATGCATGGTTTCCCACTTAGCATTCAAAATGTTGTATAAAGAGTAGTTTTCAATTTCTTACATGTTCTTCCAAGTAAACTGAAAATGAGTTTTCACATCTTACTTTGTTTCTTGTTCAATCTGCTGCACCCCCCCCCTTAAGCTGTCTTTTTTTCCCAGCAGACCCTGCATGCAGTTGTGTGAGGACTTTTCTCTAACATTTGTAAATTGTCTCATCTGCAATAACCACTGAACATCATCCCTCCTTGGGAGTCTTTAGATTTTTGGTGAAGTATTTTGTTACCTCAGTCTTGTATCAAGTTGCTGTATTTTTCAGCTTGTTACACTGATAATAATTGTTTCACTAATTAAATACTTTAATGTACAGACATCTTTGTTTACTTTGAAATTAAATGTGTTTTCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038831:ENSMUST00000042615:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(22.3=80.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types