DreINT0124247 @ danRer10
Intron Retention
Gene
ENSDARG00000068370 | ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:ZFIN;Acc:ZDB-GENE-070720-16]
Coordinates
chr8:32905394-32907805:-
Coord C1 exon
chr8:32907714-32907805
Coord A exon
chr8:32905979-32907713
Coord C2 exon
chr8:32905394-32905978
Length
1735 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
ACTGCATTTGTTTTCTGCAGATG
3' ss Score
10.76
Exon sequences
Seq C1 exon
GTAATGTTTACAAGTTCCAGACTGGGTCACGTTTCTCTGCGATTATCTGGCACAGACACCTAGCCGAGGCTTGCAGGAGTACAAGGCCGCAG
Seq A exon
GTATGTTTGTTCTCATATAAAATAAATATAGCCCTTTAAAAATAACTGCAGTACAACAGCAGTATATAGAAGTATAACTGCAGTAAAATTACAATACAATGATTTTTAGAGTTTATATGCAAAAACAAATAATAAAAAAATTCCAGTAAATTGAACAGTAATAGTATAATGTAGCTTATATACAAGAATAACTGGCAAAATTCAATGCAACTGCAAAATCGCAGTATAATGAGGTATAAACACAGTTTAACTACAATGCATTATAGTTCAACAGCAGTAAAATCTGCAGTGCAACTAAATTAACATTAAAAAGGCAGTATAATGATATGCAATATAATTTATTGCACTTTGATACATAATACGTATTAAAAAGCACTTTAGTTTTATTATGTATTGCAGTATTTTAGATTTGTTTCTGTAGCTATTTATACTACTGAAAAGTGCAATACAGTATATTGTGGTAGTACCTCAGCAGTACAACTAAATTACTCAAACCTTAATTGGTAACTATTGTCCACTGAGCAAGATAAATAGAAGTTGTACTGCAGTTGTTTTGTAGAAGTACTTCAGCTGTATTGCAATTGCGGTATAACAGTTGTACTGTTGTAGTACTTCAGTTGTATTGCAGTAGCAGTACTGCATTATAGTACTTGTAGTACTCCAGTACCATTGCAGTAGTTGTACTGCATTACAGTATTATATCATTTCAGTACTATTGCAGTAGTTGTACTGTACTTGAGTTATATTGCAGTATATGTACTGCAGTTAGTTGTACTGTAGTACTTTAGTTGTATTGCAGTAATACTGCAATATACTTAAATAATGCAGTTTATTTGTGTCCAAAAAAGTCACCTGCAGTATTCTTTTTATAAAAACAACTGCAGTAATGTAGTTGTATAAAGGGGAGCTTCACACTGTGTTCTTGTGAATATAAACCCCAACATTATCCCTGGGTAAATGACAGCTATGGAAACAAGTTATTCAAAGCAACACACGTGGAGTCTCATTGTTACTTACAATCCATGAAAAAATAAATAAACATATTCAGCCAAACCAAAAGACAATTTTGACACATTTAACATTTCTCACGTAAAGGATGGCAAATTTTGATATTAACGTGAAGCACCAACTTGAAAAATGGGGTAGTTTGGGGATTCTGACATCCTGAACATTTAGTCACAGGAAAGTCAAACATCCTAATGTGAGTTTTATATATGATATTTCTGTAAGAAGCTGTATCAGTGTGATTTGCAACTTATAGATAAAGCAGAAATGCAGATAAAGCAGAAATATGTGTATTAATGTTATTTGCAAGTGCAAGCTAACAGCTTGTATATATATTATAAAAAAAAGGTTTAAATACTTAGGTGTTTCTCGTCGAGCCAGTCATTTTGATAATTTCTCCAATTAAAGACCTACTGTATGTAAGGAAAAGAGTTGACAGTCTATTACATTTTAGTTTCTCATTTGCTATAGTTTATAAAAATGGCATTGAAATACATCTTGTTTTTTAGTCTACTGTTAGATTAGTTTTTTTCAGTTACAGTTTACTCTATTTTTCTATCTCACTTACATAAATGACAAATCCAAAAATAGTTGTTGTCTGAATAATTGATGTGGAATGTGGAACAGGAAGAATGTTGTTTATCCAAGGTTTAACTGTTTCGTGTGAAATTTAGGTGTGTGTGTTTACCTAACTTGTTAAAATCAGGAATACTGCATTTGTTTTCTGCAG
Seq C2 exon
ATGCCAGCAAACCTCATGTCCTTTGAATAAATGTTTTTGGGGAAGTGGGACATAAATAAAAGGAACAAACCTACTGCAGAAAGACATTGCAGAAGAGCTTCTGAGAAGAAAAGGACATGTTAAAACTGAAGGACCTGACGTAGTTGGAAATGAGGCAGCTGTATCTGTTGAAAAAGTCTGATTCATTCAGATCTTGTAGACACGGCTGTACTGAGAAAAGTGTTTTCTGTCTTGACTTCGGAGGTAACACTTTACAATAAGGTTTAATTTGTTGACATTAGTTAATGCAGTATGTAACAGGAACTAGCAAAACAATAATTGTATAGCATTCATTAGGTTAATGTTTATATTTAAATAGGCTGAAATTCTCTACTAAATTTTGTTAATTCATAATCCATTAATCAATGGTAAATAATGCCTAAATTTTAACTTAAAGGGACAGTTCATGCCGAGGATTTAGGGCAGCTTCCTCTGCTTTAGAAGATTATCAAAGATTATTACTGTGGCTAATGCTGTGTTTCTTGGTGGAACATAAAAAGCAAGTCAGAAGCTACTGGCACTTTGAGAGCCAAAAAAAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068370:ENSDART00000098840:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(22.3=80.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTTCCAGACTGGGTCACG
R:
ACCTTATTGTAAAGTGTTACCTCCGA
Band lengths:
345-2080
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]