HsaINT0137035 @ hg19
Intron Retention
Gene
ENSG00000136828 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:16851]
Coordinates
chr9:129977030-129985445:+
Coord C1 exon
chr9:129977030-129977121
Coord A exon
chr9:129977122-129981018
Coord C2 exon
chr9:129981019-129985445
Length
3897 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
GGCTGAGCTTTCTCTTCTAGGTA
3' ss Score
8.97
Exon sequences
Seq C1 exon
GCAATGTTTACAAGTTTCAGACTGGTTCCCGATTTCATGCAATACTGTGGCACAAGCATTTGGATGATGCATGTAAAAGCAACAGGCCTCAG
Seq A exon
GTAAAGTCATCAAAATCCTGCTTGTCACCTGAAATATCCTCTCCCACCCTTGGAACTAAGGGTCTTTAGAAAACAGGGTTCCCTTCTTCTTTCAGAGCCCATTAGCCACACTCTCAGATACCCTCTTCTGATCAGCATCTTCCCTTGAGACAAGGCACCCCCTTGCTCAGCTTAGAACTAAGCCCAGCTCCAGACCAGAACTTTGAATCTGGTTCCTGTGTCTTTCCCACAATAGGAAATGCCACAGAAACACCCACTGGGGGATGATTATGAGCAGCTGTGATATCACCCCAGGATCAGGTTCTAGCATCTATTTAGGTCATCCCTGCCAAGAGCTGACTTCATGGGAATACTCCAGACTCACTAAAGGGCCTCCCTGCCCCACAACCCTTGGGAATAATGCGGCTAGCTAACTTACTGACAGCCAGCCATGGACCACGCAAAGCTGCTGGTGAAAGGGGGTCCCTAGCTTCTCAGTGTGTTTGAGCCAGCAGGATCTGTCTTGACATAGGCCCTCTCTGGCCTGGCTCATGGTATGGCCCCCTCCCCTGGTCGCCCCCAGCCGTCCCACGAAGGGTGTTATGCGAAATGTTTCCCATGCAGGAATTGGCTGAATTCTCTCAACATCCCTGTGAGGTAGATTCTCTTACTGTCTCCGTTTTATGCTGAGGGTCCTGAGGCTCAGAAAGGGGCAGACACACATTTAAGGTCCCACATTAGTGAGCAGTGGAGCTGGGATTGAACCCAGGTCTGCCTGACTCCCCCGATTGTCTGCTTGTTGCCCCTGAGCCCTCCTGCCTCTCCTGCCTCCACTTCCCTGGTAACCCCTGCAGCTGAGCAAAAGACTGGAAGCACATCCCCAGCTGTCAAGGCTTATGAGAGAAATGGCTACCTGAGCCCTCAGCAGCAGATGGGGGCGGGCTGAAGCCTCCTGCTCCCTGGGGGTCAGGTGGGCAGCACTGATGCTCCTGTCCCTAAGTGTCCATGTGTGTTTTCCCCAGGGATCAGCCAGAGGAGGAGCGGGGGAAGCAGGAGTCCTCTCCTAGCCCATCTTGGGAGGGCTAGGCGCATGGCATAGAGGGTGGCGCTTCAAGGAGGACAGTTAGGCGTAGTGCCTGGGAGTAGACTCAGCAGGCCCCTTGCAGGCAGCAGCTCTGAAGTCTGGGGGACCTCAGCAAAGGCAAGTTCATACCAGGCATTTGGGTCCAGGAGGATGGGGACTTCATGGTGCCACGTGGCACAGTCACAGACTTCCTGGTCCCTCCAAGTGGTTCTGGAAGCTGAAGGGAGGTCTCTAGTGACAGTGACAGGTCCTAGGGCTCTGTGCTCAGCTCGGTCTGTAACACAGATGAGGACAAATACAAGAAGCTGATTGCAATTACAGATGATAAGTTAGAAAGCAGAATTAGCAAGTTCTCAGAATTAGTCCTCGACCAACTAAAACAGGACAAGACCAATACAAGAATAAACATGAGGTGCCACAGGGAGGTTCCAAATAGATTGCACTTGATTCCCTTGACTCACCCATCTGACTTCGGGGAATTTGTCATAGGGATGTGTACACACATGTGCTCAAAGATGTGTTTAAGAATGTTCACTGCAGCATTGTTCTTGATAGGAACCAAAACCCTGGAAGCCTCTGTGACCCTTAGGGGGACCCTATTGTGTGACACTTGATAGTTATTAGAAAGAGGCAGATCAGGGCAAAAACATTTGGAAAGGATGATCTCATCTGTATAAAAGTTCTAAGATGATACACAAGAAATGGTAATTCTGTAGCTTCTAGAGAGCTTTATGTATAGTTTGTACACTGAATAAATGTAATTGGCCATCCGTATGACAGGAAGACAAGGGTTTTGGTCGGCAGCCATCTCAAGGTGATCCATTGAGACAAGGTGCCAAGACCTGAACAAGGCTGCCGCCGCCCCAGCTTGCATTAAGAGAGGAAGAGCATCCTGGCCTCCTCCATACTGGTCACACCATGTGTGTCTGGGGTCCCTCAGTAGCTCTGAGGGCCGCTCTCTTAAGAGCATAGCACACTGAAGCTCCCCTACCACACACAGGAAGCCGGAGCAGCTCCAGGTCCAACAGGAACTGACAGCCACGAGGTGGACCACCTGGAGGGCGGTGCGGGGAAGGAGGCAGGGCCCTGTGCCTGAAGCCTGGGCACCATGGTGGCCCCAGTCAGGAGCAACAGTGGTAGCCCTGAGTAAAACCCATTGTCCCTCTTTGGAGGAGCGGCCAGAGGATGACAGCAGCCCCAGCAGGCAGCAGTGCCTGGGCAGGCTGATCCAGCAGAGCACTAATGGGTCAGTTTCATGTATTGGCAGATGTGGTGTAGCATGGCAAGGCTACAAGTTTTAAGGATTTTTGTCTGATTTTCAGACCTGGAGGAGGGGATTTTTCTTCCTACTTTCCCCCTTTTTTATTTCTAATTTACTTTCAACCAAATATTCCCACTATGTGCTATATGTAATAATAAAAAGTTGACAACAACTGAAATATTCAACAGCAGAGGATGATTTAAGTGAATCACAGTACATCCGTGTGATGGAATGCCAGGAGGGTGTAAGAAAGAGTGTGACAGAAATGCATCTATTCACAAGGAAACATCGCAGTGACTAGAGTGATTTTCTGTTCTGTGGAACTGCATGTCCTAAACTTGTTTTTATTAACACTGAATACACTTAAACCTTATCTATAACATATGTATAGGTATAAACAACAGCAATAAAACACCTTATTGCCACCATGAGCCTAACAGCAGAGCCACCAGGGCCTTGGAATGCTGTCCCTCACCATGGCCTCTTCCTAATTCGGTTTCTCTCCCTCCCACCTGTGCCCCAGCACCACTCTCCTGATTTGTTTGCTGATTATTCCTTTAGAATTGCAGGTCACGTACTTGATTCCTTCATGTGTTGTCTGGGGTGCATTTTTAAACTTTCTTATAAATAGAACCATAAAGATGCATTTTCTTGTGTCTTGCTTTTCTCCTGTAACATGTTCCTAGGATTCATCTGTGTTACCACATGTAGCAGTCATTCATTTATTTTTACTCATTTTGTTTTTATTAGTTCTTCTGTTGGACATCCCAGGACTGATTTTCCGCTTTTTTGCTATAGTGAACAGTACTGCTAATGACCATTCTTATAACTGTCTCCTGGTACATGGAGATGCATTTTTTTCCTAATTCATAGTTTGACCAAACTGACACCAAAATGGATTTTTTTAAATGAAATTATTTCTAATCAAATCCTCCCACAGCAGTGCTGAGGGAGGAGGTCTGGGGCTGAGGACCTGTTGGCAGCTTTTGGGGGTGGCAGAAACACTCTGACCTTGGGGCTAGTGGTCCCGCCAGTAAAGGGGTCTAGGATCTTGTCCTGAGGGCAGAGCTGTGGGAAGGTCTTGGGGTTTCTGATATCCCTGAACTGACTCTTTCTCCCATGCTTCCCTTTGCCAACTCCAGCCACCCACCCTCTGCACACACCTCAGGCCTTCAGGATTTGTCTCTCTGCCCCAAGCGCAGTTTGATTTTCACTGAAGGAGATAGGTTAAGAGCATGGGCTCTGGGTTCTTAGCCCTGCTGCTTACTTGCTGTGTACTGAACCTCCCTAAGCCTCAGTTTCCTGTCTTTGTAATGAGGACGATCCCAGTGCCTGCCCCAGGGGTTGAAGTGAGGACTCAAGAACGCAGTGCATGCGGTGGATTCAGAGCAGTGCCTGGCACGCAGCTGCCACTTCACATGGGGTGGCTATTGTTATTGCCATACCCTCTCCCTACCCAACCTGCTCATTCCCAGACTCACGGGGAAAGGCCTGTCCCTTCCCCTAGGGACCACCACCCCTTGTCCTTCTCTGAGGTCGGAACTTTAACAAGAGGCTGAGCTTTCTCTTCTAG
Seq C2 exon
GTACCTGCAAACCTTATGTCATTTGAGTAAGTCTCTGCAGGACGTGGCATGACTTCAGAGGCTTCTGGGAACCCAGGCTGGGCCTGGTGGTGAAGAGCAGTCCTGGGCACAGGCTGTGAGCCAGGGTGCTGGGAAACTCACAGCTGGACTCAGGGGACACGGCCTGTGGCCTCACCATCCCAGAGGGCTTCACCAGTGTGGGATCCACCTGTCAGTCCCCAGCGACTCTCATGACACTCATTCTGCAGCACCGCCTCTTGGGGCAGTGGTCAGACCCCACACGCCCTCTCTGGGCCCACCACCTGCATCTGCGACTAGAGAGCACCCGGCCCACGTTGGGTTCTCAGTGCTTTCTACTGCACAGAGTGGACAGCGCTAACTAACCTGTGAGAGGGGCCCGAGAGAAGGAACAGCTGTGGAACAGGCTTTTTACACCCCAAGTGCATGGGGTTGCTCGCCCACAGGGCTGCCTCAGATTTTGTACAACCCCGAAGCGTCCTCTGCGTGTGCGTGCTGTACGTGTGTGTGTGTGTGTGAGCGAGTGTGAACTCTTCAAGAAACATGCATTTTGGCACAAGACTCGTGACATCACACACTTCATTCGCTTTGAGGCCCTGCTTTAACCTTAAGTTATAGCCCTGTCCACCGAGGAAGGTCAGGGTGAGAGCCTAGATTCCTCCTGTGTCAAGGGTCCCTCGCATTCTTTTACTGTAAACAAACAATGCCTTAAATTGTGTCTTGTTTTCTGTTCCTATGGGTGCTATTCATCTGGAAGGCCTGCTTCCAGGCCTCTTTGCTGTCAGCCCTTCTGAGACAGGACCTGGCTTCAGGACTGTGGACTGGGCTGCTGGCCTGCTTGCTTCCTCCCTTCCCCATTCCTAGCAGGGCCTGAGGCCCTCCTCTTCTCGCCCTTCCCACCATGCCAGAATGGGAAGTTGTGACGTTGCAGCTCCAACCGACGTGCTCATAGTGATCAGCTGTGCAGGAGCCATGAGGCACCAACCTCTCCCCGCAGGGCAAAGCCTGTGCCCCCATCATCTCACTCCTTTGCCTGCACTGCCAGGGTGGGGCCCACCAAGATTCCTGATCATGACGGGAAGCTGAGTGACCCTGAGGCCTTAAGCTTCCCCAGTCTTGGCCCCAAATGCAGTCACCAGCAAGTTTTCCATTTTCCAAGTCCAAGGGCACAATTGTTGATGACCGTGTGACAATAGAGCGAAGCCCCGGGGAGTGAACGGTCCAACCTCTGCATTCAGTTAGGAGCTCTTCACATGAATCACATCCTTATCTGTCACCTTGTGTCACATTTTAAAGTGACTTTTATTTTGCACAAATAATTTTTATTCAGAATAATAAATCACTCTTTATCATAGTATCTTCTCTTCCCTCTTCCCCTTTAGTTTGGATAGCCTAACTCTGAGAAGTTAACCCTTAAACAGTTTTCTGGAAGAGACTGAATTTCTGGGTCCTTGCAGCTGTGATGGTTTCAGAGCTCAGACTGATCAGGCATCAAGCTACCCTCAAGAGTTTCTGGGCTGGATGTTTCAGAACAACATCTACACCAGTAAAGTGTAATAGGTCAGTTTCAAAACGACCAAAAGACCCACCACTGTATTTTGACCAAATAATGACAACTTCTTTAGAAATTTGAATGGCTTGGTGAGGAAAGTAGTTGTCACCAGGGCCTCATTTTGTAGTTGAGCCTTACAATGCTTAGTAGTTCATCTTCTTTTTGAGCAAAGACTAGAATACTTTCCTCCTAAGAGAAACTCCCAGGTGATAAAAGTTGATGCCATCAAACCTTGACACCGGGTGCTCTGCACACCCACGCGGATGTTGCACCTCATTCTCCCGATGACTATTCAAATCAGCATCTAGAGGCTGAATGACAATGCCAAACACTCCACCTCTGATCAGAACCATGCAGTGTTAACACTTTAACCTACATTGAATCTGATTCTACCTGTTAACTTTTAAAAAGTCGTAAGTTTGGATGAAAGTGCAAGATGTGGAACATCAACTACCTATTTTCCTTGGGTTTTTCCACTCTGCAAACTGTCCTGGTTTTTCACACCAATGAAGTATTATAGATGCCAATCCAAAACCTCAGAATTTCAGGCACCACAAAAACAGGTAATTTTCTATCCCTTATAAGTTTGTCTTTTCTTTCAGAAACATCTCTTAGCCTAATTTGAAATAGCACAATCACAATTCAAAATGTTTAGTCTTCTCACTAATTGAGTCTGCTTCCACGTCCTCTCCCAGGAACATTCTTAGCTCGGACTCTTGAAGAATCTCTTTAGATTTTGTTGGCAAAAGCCTTATAGAAGCAGTAAGAGGCTTGACCACGCCGGAAGAGTCCTGGAGCTAAAGCTGGAAGACACTCAGCTCTCTAAGCAGGGGCTCGGCCAAACATGGGAGTTAAGTGCTGCTTGTCTTCCCAGTGTTGGTTTGAACCCTGTGAGCCTGAGACAGAGAGGGCCAGGCACCAACCACAAGGCGGGAAAGTCCATGGGTAGACCCTCCCCCTGGAGGGAAGCATTTCTAGTTTTTGCTCCTTGACTGTCCAGAGTGTACAAATGTTCATAACGCCATTGAAGGGATTATTTCTTGCATGCATATGCTGAATTTTTTTAAGCAAATGGATCATGGCACCCCAAAATGAAAGTTATAGAAAGCTGTCTACAACTGTGGAGTTGGTAGCTGGTAACATTGTTGTCTCAAGAACAACTCACCTCTCTCCCTAGGACTAATTTTTGTCTCTCTCAGTTGAACATGTTTTGTCATTCAAGATCAGTCAGGTGCATTCTGGCAACTGACATACTTGATGGAGGATTGATTCGGTAGAGAGCAGTAGAAATCTTGTTCTAACTGTGCCTGGTGAGAGACTTTGGCCCCCTCCCTCCCTATAAGGCTGTGGAACCTGAGGAAGTAGATACTTGAAGAGATTCTGTTTAGGAAGAAACTCACTCTCTTTTGCCAGTTGAATTTATAGAGCATTTTTTTTCTTACCAAGATGGCCAGTATCATTTTACCCCCACCTCCCAAGCCCCAAGAGGTGTACCTTTTCAGATGCCATTTTACAGGCGGAAATGCTCCATGAAACAGGAAGCCACTTGCAAGCAACATCTGCTCTGTTCCTCAGGTGGGGCCCAGAGCCCTTCCCCGAGACTGCTGATGTCTGTAACCACTGGGGAGCACTGCCAAAAATACAGCTTTCTGGTTTGTGAGCCCATAAATGACTTAAATCAGCTTTACATCATTTTTACATATCAAGTGGTTTCATGTTAAAAAACAAACTCCTAGTCCTTTAGAAATAACAGATTCTCTGCACAAAACCACCCATTCATTCATTTATTCATTCACAGCACTAGCAAGTGCTGCCTATGCTGAGAACAAGTCAGATCTGATCCCTGCCCTCATGGACCTGACCACTCAACAAACAGTCCCCACCACACCTATCTCCTTAGGCAAGACTTTGCCTCTCTCCTAGTCCTGAGTATAAATCCTGTGCATAGATTCCTCTAGAAAGGCATCAAAAGGCTCAACAGACTGAATGGCCTCTTGGTCTGCGAAAATTCAGTTGCAATGAGGATGAAGTCACTATCCTAGAGGCTGCTTGGCCCAGAAGAGCCAGGCACAGAGCTGCAGTTGGGCACGCCAAGGATTCCAAAGGTGGAATGAGAGAGTAGGGTCAAACTGTCACAGTATCTGCTCCATAGGTTTCTGTTTTTAATTTCAATGTTAAATACAACTACAATATGAGCGAGAACTGCATTTTCTTGGGTGTTGAGAACTTGTACCATGGACTTCAGACCGCCTTGCAGCCGTATGCTGCACAAGCGTGTACACCCCCTGGGCAGCCTCAAAACCCCGCTTACAGCAGCAACACAGGAGATCATCTGTCCATTTTAGAACCATTAATCTCTTTATCCATTGCTGAACGACTGTGACTATTCAGTAACGAAGTAATAGTAATTAATTAGTATGGTATAATCTTTAATAAATTTCGTGCCAAAATGCATGGTTTTCCACTTAGCATTCAAAATGTTGCATAGAGAGTAGTTTTCAATTTCTTATGTACTCTTCGAAGTAAGTTGAAAATCAGTTTCTACATTTTAATTCGTTTCCTGTTAAATCTGTTGCACTCTCCTGGGCTGTCTTTTTCTCCAGCAGACCCCTGCATGCAGTTGTGTAAGGACTTTCTCTAATTCTTGTGAATCGTCTCACCCGCAGTAACCACTGAACGTCAATCAGCCCTCCATGGGGTTCTTTCGATTTTTGGTGAAGTATTTTGTTACCTCAGTCTTGTATCAAGTTGCTGTATTTTTCAGCTTGTTACATTGATAATAATTATTTCACTAATTAAATACTTTAATGTACAAACATCTTTGTTTACTTTGAAATTAAATGTGTTTTCCAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136828-RALGPS1:NM_014636:18
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(22.3=80.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)