MmuEX0016462 @ mm9
Exon Skipping
Gene
ENSMUSG00000036893 | Ehmt1
Description
euchromatic histone methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924933]
Coordinates
chr2:24742523-24775129:-
Coord C1 exon
chr2:24775074-24775129
Coord A exon
chr2:24768787-24768918
Coord C2 exon
chr2:24742523-24742589
Length
132 bp
Sequences
Splice sites
3' ss Seq
AAATTTTTTTTTTTTTACAGGCT
3' ss Score
9.16
5' ss Seq
CATGTAGGC
5' ss Score
2.82
Exon sequences
Seq C1 exon
GCGGGAGGGGCGGGGCCACGCTGCGGGCCCGGGCCATGGCCGCCGCTGATGCTGAG
Seq A exon
GCTGGAGAGATGGCTAGGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGACCTGGGTTTAATTCCCACCACTACATGACAGCTCACAACTGTTTATAACTCCAAGATCTGACAACCTCACACAGACATACAT
Seq C2 exon
CAGGCAGTTCTGGCCAAGCAAGAGACCAAGCAGGATTGCTGCATGAAAACTGAGCTGCTAAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036893-'0-1,'0-0,1-1
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.961 A=0.520 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: