MmuINT0146291 @ mm9
Intron Retention
Gene
ENSMUSG00000006469 | Slc34a3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:MGI Symbol;Acc:MGI:2159410]
Coordinates
chr2:25086743-25087030:-
Coord C1 exon
chr2:25086941-25087030
Coord A exon
chr2:25086831-25086940
Coord C2 exon
chr2:25086743-25086830
Length
110 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
GAGTCCTCCCTATCCCTCAGCCC
3' ss Score
5.42
Exon sequences
Seq C1 exon
CTGGATAGCAGTGTGATAACCAGCGGTATTACCAGCAACACCACTAACAGCAGCCTGATTAAGCATTGGTGTGGCTTCAGGGGGGAGACG
Seq A exon
GTGAGGTGCCTCTGACATGCCGAATCGTCCCGCCCACTTGATTGTGAGCCTTCTGAATCTCTCTCTGTCTTCCTACTGTGAGCTTGGCCTGAGTCCTCCCTATCCCTCAG
Seq C2 exon
CCCCAGGGAAGCAGTGAGGGATGTGGCCTCTTCAGCTCTTGCACAGAGAGGAACAGCTCAGCATCTCCAGAGGAGGACAGATTGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006469-Slc34a3:NM_080854:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATAGCAGTGTGATAACCAGC
R:
AGAGCAATCTGTCCTCCTCTGG
Band lengths:
178-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: