RnoINT0137631 @ rn6
Intron Retention
Gene
ENSRNOG00000010451 | Slc34a3
Description
solute carrier family 34 member 3 [Source:RGD Symbol;Acc:708551]
Coordinates
chr3:2450820-2451110:-
Coord C1 exon
chr3:2451021-2451110
Coord A exon
chr3:2450908-2451020
Coord C2 exon
chr3:2450820-2450907
Length
113 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
GAGTCCTCCCTATCCCTCAGCCC
3' ss Score
5.42
Exon sequences
Seq C1 exon
CTGGATAGCAGTGTGGTTACCAGCAGCATTACCAGCAACACCACTAACAGCAGCCTGATTAAGCACTGGTGTGGCTTCAGGGGGGAGACG
Seq A exon
GTGAGGTGCCTCTGACCCTATCCCTCATTCGACCTCTGACCCACTTGATTATGAGCCTTATGAATCTCTGTCTGCCTGCTGTGAGTCTGGCCTGAGTCCTCCCTATCCCTCAG
Seq C2 exon
CCCCAGGGAAGCAGTGAGGAATGCGACCTCTCGGGCTCTTGCACAGAGAGGAACAGCTCAGCATCTCCAGGAGAGGACAGACTGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010451:ENSRNOT00000014060:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATAGCAGTGTGGTTACCA
R:
AGAGCAGTCTGTCCTCTCCTG
Band lengths:
178-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]