GgaINT0016681 @ galGal3
Intron Retention
Gene
ENSGALG00000003075 | SLC34A1
Description
NA
Coordinates
chr13:10215223-10215555:+
Coord C1 exon
chr13:10215223-10215318
Coord A exon
chr13:10215319-10215485
Coord C2 exon
chr13:10215486-10215555
Length
167 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GTGGGGTAGGGGTGCCTCCAAAC
3' ss Score
-21.62
Exon sequences
Seq C1 exon
CTGGACAAGTCGGTGATCACAGGCATTGCGACAGGGGATGAGAGCCTGCGCAACCGCAGCCTCATCCGCATGTGGTGCGGCCCCGCACCTCCCCAG
Seq A exon
GTGAGGGGCTCATGGCCTTGCTATGGTGCTGGGGGGGGCAGTCTGGCCATCCAGATCCCCCCTAAAAGCACCTCATGGAGGGCAGTGGGCTGGTGAAGATGCTGTGGACTCACCCACAGCCTGCCCGCTCCTTGCAGACTGCTGCCGGTGGGGTAGGGGTGCCTCCA
Seq C2 exon
AACTGCACGGCTTCTGGACATTGCAGCAGTAATGGCATTGGGATCCTCCACAACGTCACCAGGCAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003075:ENSGALT00000004859:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGTCGGTGATCACAGGC
R:
TTTCTGCCTGGTGACGTTGTG
Band lengths:
162-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]